Structure of PDB 7nad Chain x Binding Site BS01 |
| >7nad Chain x (length=539) Species: 1247190 (Saccharomyces cerevisiae BY4741)
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SLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVT
GSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVV
LSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVL
DFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFS
ATMRSAGSDIFKTGLRNPVRITVNSSSLKLNYCVVNPAEKLQLLVSILNN
YKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSAR
TKTLTAFTDSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGR
TGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITANFYED
FRNWILEDRDRFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGIAKLYG
LFRLPRMPEITKYLNWLVDPPVNMDEYKYKDKKREKERQETLKNISLIND
KKKLKSELKKKNLAWSDKTLTKERKLERKEKMSLKRKAI |
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| >7nad Chain 1 (length=697)
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augccugaauagggugaagccagaggaaacucugguggaggcucgcgaau
uuggguauaguagcaaauauucaaaugagaacuuugaagacugaaguggg
gaaagguuccacgucaacagcaguuggacguggguuagucgauccuaaga
gaugguuucaaaggccugacaggccaccaucgaaagggaauccgguuaag
auuccggaaccuggauauggauucuucacgguaacguaacugaaugugga
gacgucggcgcgagcccugggaggaguuaucuuuucuucuuaacagcuua
ucaccccggaauugguuuauccggagauggggucuuauggcuggaagagg
ccagcaccuuugcuggcuccggugcgcuugugacggcccgugaaaaucca
caggaaggaauaguuuucaugccaggucguacugucuccaaggugaacag
ccucuaguugauagaagauaagggaagucgguccguaacuucgggauaag
gauuggcucuaagggucggguagugagggccuuggucacggccuuggcuu
gcuacaauuaacgaucaacuuagaacugguacggacaaggggaaucugac
uguuaacgagauucccacugucccuaucuacuaucuagcgaggcugucug
aucaggcauugcguaagcaguagaguagccguuacgaucugcugaga |
<<<<<<<<...<<<....<<<<<<<....>>>>>>>.....>>>......
>>>>>>>>....<<.....<<<<<<.......>>>>>><<<<.....<<<
<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<<
............<<<<<<.>>>>>>....>>....>>...<<<<<.....
...>>>>>))<<<<.<<<<<<......<<<....>>>.......<<<<<<
...<<<<.<<<<<<<.<<<<<<<<<<..(((..>>>>>><...<<<<<..
..<<<<<<....<<<.....>>>....>>>>>>.....>>>>>....><<
<<<<<......>>>>>>>>>>>...>>>>>>>.>>>>.........>>>>
>>............>>.>>>>>>>>>>>>..>>.>>>>>.<<<<.....>
>>>..>>>>..<<<<.<<<<.<<........<<<<<<.<<<<........
.............<<<<<.<<<<<<<<..<<..<<<<..>>>>..>>>>>
>>>>>......>>>>>......>>>...>>>>>>>....<<<<<<<<<..
......>>.>>>>>>>.....>>.>>>>.....>>>>>>...<<<<<<<)
)).>>>>>..>>....<<<<....<<.......>>...>>>>..... |
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| PDB | 7nad Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. |
| Resolution | 3.04 Å |
Binding residue
(original residue number in PDB) | P91 R93 G124 T125 T148 G150 R151 D154 R176 F182 E187 K195 K215 P269 T270 C271 Y278 F297 S298 G301 L303 R308 K310 T311 T327 D328 V329 V430 A431 K434 Y435 R463 L464 P465 R466 M467 P468 E469 K504 K522 K523 K524 K526 N533 L534 W536 S537 D538 R545 K546 E548 R549 |
Binding residue
(residue number reindexed from 1) | P88 R90 G121 T122 T145 G147 R148 D151 R173 F179 E184 K192 K212 P261 T262 C263 Y270 F289 S290 G293 L295 R300 K302 T303 T317 D318 V319 V420 A421 K424 Y425 R453 L454 P455 R456 M457 P458 E459 K483 K501 K502 K503 K505 N512 L513 W515 S516 D517 R524 K525 E527 R528 |
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| Enzyme Commision number |
3.6.4.13: RNA helicase. |
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