Structure of PDB 5x8r Chain x Binding Site BS01

Receptor Information

>5x8r Chain x (length=37) Species: 3562 (Spinacia oleracea)

GRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIF

Ligand information

>5x8r Chain a (length=1480)

ucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuuaa
cacaugcaagucggacgggaaguguuuccaguggcggacgggugaguaac
gcguaagaaccugcccuugggaggggaacaacagcuggaaacggcugcua
auaccccguaggcugagaagcaaaaggaggaauccgcccgaggaggggcu
cgcgucugauuagcuaguuggugagguaauagcuuaccaaggcgaugauc
aguagcugguccgagaggaugaucagccacacugggacugagacacggcc
cagacuccuacgggaggcagcaguggggaauuuuccgcaaugggcgaaag
ccugacggagcaaugccgcguggaggcagaaggcccacgggucgugaacu
ucuuuucccggagaagaagcaaugacgguauccggggaauaagcaucggc
uaacucugugccagcagccgcgguaagacagaggaugcaagcguuauccg
gaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgccguca
aaucccagggcucaacccuggacaggcgguggaaacuaccaagcuggagu
acgguaggggcagagggaauuuccgguggagcggugaaaugcguagagau
cggaaagaacaccaacggcgaaagcacucugcugggccgacacugacacu
gagagacgaaagcuaggggagcgaaugggauuagauaccccaguaguccu
agccguaaacgauggauacuaggcgcugugcguaucgacccgugcagugu
uguagcuaacgcguuaaguaucccgccuggggaguacguucgcaagaaug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccgcgaau
ccucuugaaagagaggggugccuucgggaacgcggacacagguggugcau
ggcugucgucagcucgugccguaagguguuggguuaagucccgcaacgag
cgcaacccucguguuuaguugccaacguguuuggaacccugaacagacug
ccggugauaagccggaggaaggugaggaugacgucaagucaucaugcccc
uuaugcccugggcgacacacgugcuacaauggccgggacaaagggucgcg
aucccgcgagggugagcuaaccccaaaaacccguccucaguucggauugc
aggcugcaacucgccugcaugaagccggaaucgcuaguaaucgccgguca
gccauacggcggugaauucguucccgggccuuguacacaccgcccgucac
acuaugggagcuggccaugcccgaagucguuaccuuaaccgcaaggaggg
ggaugccgaaggcagggcuagugacuggagugaagucguaacaagguagc
cguacuggaaggugcggcuggaucaccucc

.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<<<<<..>>>>>.>>>>>......<<.......
<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>>>...
...>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>>>.>>
.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>......>
>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.........>>>
>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<....>
>>>..>>>..>>.>>>>>>..<<<<......<<<<<..>>>>>.....>>
>>...<<<<<<<..................>>>>>>>.....<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<<<<<.
....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>...<<<
.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>......>>
>>>>>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<........>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<......<<<<<<<..<
<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<...<<<<.....>>>>....>>>>>>>.....
<<<<<.....>>>>>........>>>>.........>>>...>>>>>>>>
>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....<<<..<<.
..<<<....>>>...>>....>>>.....>>>>.>>......<....<<<
<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<....
......>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<
<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<....>>.>>>
>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>.....<<<
<<<<<<....>>>>>>>>>...........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5x8r Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
• Resolution: 3.7 Å
• Binding residue (original residue number in PDB): G55 R56 G57 D58 R59 K60 K65 R66 N68 S70 F71 N73 K81 G82 R83
• Binding residue (residue number reindexed from 1): G1 R2 G3 D4 R5 K6 K11 R12 N14 S16 F17 N19 K27 G28 R29

Gene Ontology

Cellular Component

• GO:0005840 ribosome

External links

• PDB: RCSB:5x8r, PDBe:5x8r, PDBj:5x8r
• PDBsum: 5x8r
• PubMed: 28582576
• UniProt: P47910|RR31_SPIOL Small ribosomal subunit protein bTHXc (Gene Name=RPS31)