Structure of PDB 1ml5 Chain x Binding Site BS01

Receptor Information
>1ml5 Chain x (length=60) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKV
AHLVRVEVVE
Ligand information
>1ml5 Chain a (length=2889) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggucaagaugguaagggcccacgguggaugccucggcacccgagccgaug
aaggacguggcuaccugcgauaagccagggggagccgguagcgggcgugg
aucccuggauguccgaaugggggaacccggccggcgggaacgccggucac
cgcgcuuuugcgcggggggaaccuggggaacugaaacaucucaguaccca
gaggagaggaaagagaaaucgacucccugaguagcggcgagcgaaagggg
accagccuaaaccguccggcuuguccgggcggggucguggggcccucgga
caccgaauccccagccuagccgaagcuguugggaagcagcgccagagagg
gugaaagccccguaggcgaaagguggggggauaggugaggguacccgagu
accccgugguucguggagccaugggggaaucugggcggaccaccgccuaa
ggcuaaguacuccgggugaccgauagcgcaccaguaccgugagggaaagg
ugaaaagaaccccgggaggggagugaaauagagccugaaaccgugggcuu
acaagcagucacggccccgcaagggguuguggcgugccuauugaagcaug
agccggcgacucacggucgugggcgagcuuaagccguugaggcggaggcg
uagggaaaccgaguccgaacagggcgcaaaguccgcggccguggacccga
aaccgggcgagcuagcccuggccagggugaagcuggggugagacccagug
gaggcccgaaccggugggggaugcaaaccccucggaugagcuggggcuag
gagugaaaagcuaaccgagcccggagauagcugguucuccccgaaaugac
uuuagggucagccucaggcgcugacuggggccuguagagcacugauaggg
cuagggggcccaccagccuaccaaacccugucaaacuccgaaggguccca
gguggagccugggagugagggcgcgagcgauaacguccgcguccgagcgc
gggaacaaccgagaccgccagcuaaggcccccaagucugggcuaaguggu
aaaggauguggcgccgcgaagacagccaggagguuggcuuagaagcagcc
auccuuuaaagagugcguaauagcucacuggucgaguggcgccgcgccga
aaaugaugcggggcuuaagcccagcgccgaagcugcgggucugggggaug
accccaggcgguaggggagcguucccgaugccgaugaaggccgacccgcg
aggcggcuggagguaagggaagugcgaaugccggcaugaguaacgauaaa
gagggugagaaucccucucgccguaagcccaaggguuccuacgcaauggu
cgucagcguaggguuaggcgggaccuaaggugaagccgaaaggcguagcc
gaagggcagccgguuaauauuccggcccuucccgcaggugcgaugggggg
acgcucuaggcuagggggaccggagccauggacgagcccggccagaagcg
cagggugggagguaggcaaauccgccucccaacaagcucugcgugguggg
gaagcccguacgggugacaaccccccgaagccagggagccaagaaaagcc
ucuaagcacaaccugcgggaacccguaccgcaaaccgacacaggugggcg
ggugcaagagcacucaggcgcgcgggagaacccucgccaaggaacucugc
aaguuggccccguaacuucgggagaaggggugcucccuggggugaugagc
cccggggagccgcagugaacaggcucuggcgacuguuuaccaaaaacaca
gcucucugcgaacucguaagaggagguauagggagcgacgcuugcccggu
gccggaaggucaaggggaggggugcaagccccgaaccgaagccccgguga
acggcggccguaacuauaacgguccuaagguagcgaaauuccuugucggg
uaaguuccgaccugcacgaaaagcguaacgaccggagcgcugucucggcg
agggacccggugaaauugaacuggccgugaagaugcggccuacccguggc
aggacgaaaagaccccguggagcuuuacugcagccugguguuggcucuug
gucgcgccugcguaggauaggugggagccugugaacccccgccuccgggu
gggggggaggcgccggugaaauaccacccuggcgcggcugggggccuaac
ccucggauggggggacagcgcuuggcgggcaguuugacuggggcggucgc
cuccuaaaagguaacggaggcgcccaaagguccccucaggcgggacggaa
auccgccggagagcgcaaggguagaagggggccugacugcgaggccugca
agccgagcaggggcgaaagccgggccuagugaaccgguggucccgugugg
aagggccaucgaucaacggauaaaaguuaccccggggauaacaggcugau
cucccccgagcguccacagcggcggggagguuuggcaccucgaugucggc
ucgucgcauccuggggcugaagaaggucccaaggguugggcuguucgccc
auuaaagcggcacgcgagcuggguucagaacgucgugagacaguucgguc
ucuauccgccacgggcgcaggaggcuugaggggggcucuuccuaguacga
gaggaccggaagggacgcaccucugguuucccagcugucccuccaggggc
auaagcuggguagccaugugcggaagggauaaccgcugaaagcaucuaag
cgggaagcccgccccaagaugaggccucccacggcgucaagccgguaagg
acccgggaagaccacccgguggaugggccggggguguaagcgccgcgagg
cguugagccgaccggucccaaucguccgaggucuugacc
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<<<<......>>>>>......(<<<<<<..[.<.....[>>.....>>>>
>.>)....{...<.....>....<<<<<..........].].....>>>>
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.....<.<<<(..<<<(.<<.....<<<<......>>>>.........<<
<.......>>>..).>>....>>>..>).>>>......>>>..>>>...>
.<<<<<...<.......>}..>>>>>......<<<(......>.)>>..>
>>>......>>{.>>>>>.>>....<...]>.....<<.<..>>....>>
>........<<<.....>>>...................>>>>>>>>>>.
........<<<<<<<<<<.<..>>>>>>>>>>....<.............
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<....>>>>>.<{<<<<<<.....<<<<<<<<<...<<......<.<...
....<<<<<......>>>..>>....((>.>.....>>....>>>>>>>>
>.....>>>>>>>.....<<<<<<<.<......<<>.>>>>>>>.....<
<<......>>>...<<<<.<<<...<<<(((...{.<<<<<<.....)..
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.>>>.>)}.....>>>>>....(([....(........<<<<>.......
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.<<<..<<<<<.<.<.....).>>]>>>>>......>]>>>>.....>>}
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>.>..>>....>>>>>>>>>>}>>>..>>......<...>..>.>.>>>.
.<<<......>>>....>>>..<<<<....<<<<<<<..<<.......(.
...<...<<<<.....<....(.>..>>>><<<<<<<<<<<........>
>>.>>>>>>>.>{.>.......<<<<<<<<<.)<......{......>.(
<<[<<.<....<<<<....>>>....>.)>]>>.>>.<<<<<<.....<<
<<.<<..<<<...<<[..<<<.......>>>....>>...>>>>>>.>..
>>...(<<<..........)>>>.........<<..........<<<<<<
)....>>>>>>..>>..>...>>>>>..>>.>>>>>>>.....>>..>>>
>>>>.>>>>>>....>>>.(..<<<<<....{.).>>>>>..<<<<<<<<
.<<<.<<......<<<<..{.<<<..<<<<..<<<.<<<<<.<<<<.<.<
<<<<<(.<...........<<(.<..<<.<....><<<<<<<<....>>>
>>>>>....>>.....>......>>)....>>).>>>>>>..>>>>...<
(.<......>>)...].>>>>>.>>>...>>>>.....>.>..<....<<
.<<<...........>>>.>>..<<...[.<<<<....<<<<<<......
.>>>>>>))....<.....>.......>>>>.....<<<<..<<<.....
.>>>..>>>>.<<<....>>>.>>..].<<.......<<<<<<.......
..>>>>>>.......>>.......>>>}....>>>>.....}.<<<<..<
<<<<<<<..<<..(....>>>).>>>>>>>...>>>..>........<<<
....<<]].<<<<<<<<<......>>>>>>>..>>.<<<<<.....>>>>
>......>>>>.......>..}.....<<<<<<<>...>>>.>>>>....
>>..>>>>>>>>>>>....<<<<<<<...<<<<...<<<<<<........
...>...>>.>>>..<<<<<...<<<<...<<<<<<<<<<.....>>.>>
>...>>>>>...>>>>.>>>>>...<<<.<..<<<<........<...>>
>>>...>>>>.>>>>.......>>>>>>><.<<<<.....>>>>....<<
.<.<<<<.......>>>>>....<<<<<<<<<<......<<<<......>
>>>...}>>..>>>>>.>>>.....>>>...>>>>..>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1ml5 Structure of the Escherichia coli ribosomal termination complex with release factor 2
Resolution14.0 Å
Binding residue
(original residue number in PDB)
S11 P16
Binding residue
(residue number reindexed from 1)
S11 P16
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1ml5, PDBe:1ml5, PDBj:1ml5
PDBsum1ml5
PubMed12511961
UniProtQ5SHQ6|RL30_THET8 Large ribosomal subunit protein uL30 (Gene Name=rpmD)

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