Structure of PDB 9c4g Chain w Binding Site BS01

Receptor Information
>9c4g Chain w (length=60) Species: 1747 (Cutibacterium acnes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAVCDICAKRPGFGHNVPWSKKKTNRRWSPNIQRVRVVENGTHKRMNVCT
SCLKAGRVSR
Ligand information
>9c4g Chain a (length=2903) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caaaguuguguagugcgaucgguggaugccuuggcaccaagagccgauga
aggacguugugaccugcgauaagcccuggggaguuggugagcgagcugug
auccggggguguccgaauggggaaaccuggaauguccggaguaguguccg
guggcccugcccugaauguauaggggugugggugguaacgcggggaagug
aaacaucuuaguacccguaggaagagaaaacaagugugauuccgugagua
guggcgagcgaaagcggaggaggcuaaaccgugugugugucagguguugc
augugcgggguugugggggccuugugguucugcugccgcaggauuggcca
gugagaaauguugcgugaaggugaagcgucugggaaggcguaccggagug
ggugagaguccuguaacuguaagcguggcacuggugugggguugccccga
guagcgugggacucguggaauuucgcgugaaucuggcgggaccacccguc
aagccuaaauacuccuuggugaccgauaguggaugaguaccgugagggaa
gggugaaaaguaccccgggaggggagugaaagaguuccugaaaccggucg
caugcaagccgucagagccuguguggugauggcgugccuuuugaagaaug
agccugcgaguuagugaugcguggcgagguuaacccguggugggggaguc
guagcgaaagcgaguccgauaagggcgugagucgcguguucuagacccga
agcggugugaucuauccauggccaggaugaagcgucgguaagacgucgug
gagguccgaacccacuucaguugaaaauggaggggaugaguuguggauag
gggugaaaggccaaucaaacaccgugauagcugguucuccccgaaaugca
uuuaggugcagcguugcgugguucuuguuggagguagagcacuggauggu
cuagggggcuuaucggcuuaccgaaaucagccaaacuccgaaugcuggca
aguguagcguggcagugagacggcgggugauaagcuucgucgucgagagg
gaaacagcccagaucaucagcuaaggccccuaaguggugacucaguggga
aaggauguggaguugcguagacaaccaggagguuggcuuggaagcagcca
uccuugaaagagugcguaauagcucacuggucaagugauuccgcgccgau
aauguagcggggcuuaaguuauccgccgaagcuguggcaaccuguguggu
uggguaggggagcgucgugucaguggugaagcugccgggugacugugugg
uggaguugaugcgagugagaaugcaggcaugaguagcgugugacgggugg
gaaucccguccgccgauuauccaaggguuccagggucaaguuugucugcc
cugggugagucggguccuaaggcgaggccgacaggcguagucgaugggua
accaguugauauucugguaccggcuugucaccgcaagcugcggagggacg
cagugagguagcucauccccggugaugguuguccggggcuaagugugugg
acugucugguagguaaauccgcugggcgugaagguugaggcaugaugggg
agcccaugguugugggugagugagugauccuguacugucgagaaaagcuu
cgugagcgagguggcggguccgcccguacccuaaaccgacacugguggau
agguagaguauaccgaggcgaucgagugaaucguggugaaggaacucggc
aaaaugcccccguaacuuugggauaagggggaccugagcugucgugcacc
cgugcggugugguggcggugaggggcgcagaguccagggggaaacgacug
uuuaccaaaaacacagguccgugcgaagucguaagacgauguauacggac
ugacuccugcccggugcuggaagguuaaggggaacugugaguguaugcgu
agcggugaacuuaagccccaguaaacggcggugguaacuauaaccauccu
aagguagcgaaauuccuugucggguaaguuccgaccugcacgaauggagu
aacgauuucccuacugucuccaccaugaacucggugaaauugcauuacga
guaaagaugcucguuacgcgcagcaggacggaaagaccccgggaccuuua
cuauaguuugguauuggugauugggacgguuuucugauuguucugguuau
cucacuguggaccgugauccgguucaaggacagugccugauggguaguuu
gacuggggcggucgccuccuaaaggguaacggaggcgcccaaagguuccc
ucagccugguugguaaucagguggugaguguaagugcacaagggggcuug
acugugagacugacaggucgagcagggacgaaagucgggacuagugaucu
gacgguggcuuguggaugcgccgucacucaacggauaaaagguaccccgg
ggauaacaggcugaucuugcccgagcgcucauagcgacggcaugguuugg
caccucgaugucggcucgucgcauccuggggcuggagucggucccaaggg
uugggcuguucgcccauuaaagcggcacgcgagcuggguucagaacgucg
ugagacaguucggucccuauccgcugcgcgcggaggaaucuugagaaggg
cugucuuuaguacgagaggaccgagacggacugaccucuggugugccagu
uguucugccaagagcauggcugguuggcuacgucggguugugauaaccgc
ugaaagcaucuaagcgggaagcacgcuucaagauaaggguucccacagga
guguuccugguaagguccccgagagaugaucggguugauaggccagacgu
ggacgcaucguaagguguggagcugacugguacuaauagaccgaggacuu
uca
..<<<.......<<<<<<<<<<<.....[[..[[<<<<<<<[[<<.....
.<<<<<<....(((.>>>.....<<<<<<<...<<)))....>>......
.>>>>>>>...>>>....<<<....>>>.......<<<<<......>>>>
>..<<<<.<<<<<.........>>>>>..>>>>>>...<<<<<<.....<
<....>>......>>>>>.>.........<<<..>>>..<<<<<<.....
<<.....>>....>>>>>>..<<<....<<<<..................
....>>>>......<<<<<<<<<......<<<<....>>>>.........
.........<<..<<<...<<<...<<<<<......>>>>>((......<
<<.....))>>>...>>>......>>>..>>......>>>>>..>>>>..
...<<<<<<<<.........>>>>>>>>.......<<<<..<<<<>>>>.
..>>>......]].>>>>>>>.]]...............<<....>>...
.]].........<<<<....>>>>..................>>>>>>>>
>>>.......<<<<..<<<.....>>>..>>>>...<.<........>.>
.<<<<<<....<<<.<<<<<<<<<<..<<<...<<<.....>>>...>>>
...<<....>>..<<<<.....>>>>....>>>>>>>>>>>>>..<<.<.
.<<<<<<<.....<<<<<<<<<..<<<....<<<.<<......>>.>>>.
....>>>...<<<.<<<<<........>>>>>>>>....>>>>>>>>>..
.<<<.....>>>......>>>>>>...>..>.>>..<<<<<<....<<<<
<....>>>>><<<<<<<<<....<<<<<<<<.....<<<...<<<.<<<<
...<<.<<<<....>>>>..>>...>>>>.>>>..>>.>.....>>>>>>
>>....>>>>>>>.>>..<<<<<<<<<........>>>>>>>>>....<<
<......>>>...<<<<.<<<...<<<(((.....<<<<<<.........
..<<..<<<<<<<<<........<<<<<.<<...<<<.........>>>.
..>>.........<<......>>...>>>>>....>>>>>>>>>.>>...
........)))......>>>>>>.>>>...>>>>>>><<<<<.....>>>
>>....>>>>>>..<<<<<<<<<.......<<<<<<<<....>>>.>>>>
>....>>>>>>>>>........>>>>>><......<<....<<<<<<...
....>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>
>>>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>...
<<<<<........>>>>>))<<<.<<..<..<....<<<<<<<<<....<
<<<..<<<..<<<<<.<<<<<<...((((...>>>>>><<..<<<<...<
<<<<<<<<<<.<<.....>>>>>>>>>.....>>>>...>>>>...>>..
..<<.........>>.....>>>>>...>>>...>>>>.........>>>
>>>.>>>...>..>..>>.>>>>>>>..>>.....<<......>>>>>>>
.<<<<.....>>>>..>>>>..<<<<<...<<<<<<<<.<<.........
<.....<<<<<.....<..>......>>>>>.<<<..<<<<<<<.....<
......>.....>>>>>>>..>>>.............<<<<<<<<<..<<
<.........>>>..<<<<<<<.....<<<....>>>.......>>>>>>
>.<<<<<.<<<..<<<<<<<..<<<...<<...<<<<<..<<....>>..
.>>>>>...>>...>>>>>>>>..>>>>><<<<<<.......>>>>>>..
......<...........<<<<<<.....>>>>>>.....>....>>>>>
..>>.>>>>>>>..>..>>.>>>>>>>>>>>>>>>.....>.((..<<<<
<......))>>>>>..<<<<<<<<.(((.[[......<<<<<<<<<<..<
<<<<.<<<.<<<<<.<<<<<<<<<<<<<<........>>>>>>>>>>>>>
>...<<.<<<<<<<.....>>>>>>>>>....>>>>>.>>>..>>>>>..
<<<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<
...<<<<<<.......>>>>>>.....<<.[.(((>>....>>>>>>>..
.<<<<..<<<<....>>>>..>>>>.<<<....>>>.>>)))]......<
<<<<<<.((..>>>>..))>>>>>>>.............>>>>..>>>>>
>.......<<<<.<.<.<<<<<..<<.......>>>..>>>>.>...>>>
>.>.......<<<<<.<<<<<<..<<<<<<<<<......>>>>>>..>>>
.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<.
...>>>.>>>>....]]..)))>>>>>>>>....<<<<<<<...<<<<..
<<<<<<<...............>>>>>>>.<<<<<...<<<<..<<<<<<
<<<<<<))))>>>>>>..>>>>>>..>>>>.>>>>>..<<<<....<<<<
<...........>>>>>....>>>>>>>>.......>>>>>>>..<<<<<
....>>>>>....<<<<<<<<<.......>>>>>....<<<<<<<<..<<
....<<<<<....>>>>>...>>...>>>>>.>>>...>>>>......>>
>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9c4g Mechanistic basis for the translation inhibition of Cutibacterium acnes by Clindamycin.
Resolution2.53 Å
Binding residue
(original residue number in PDB)
A2 A3 V4 K10 R11 P12 F14 G15 H16 V18 P19 W20 S21 K22 K23 K24 N26 R27 R28 W29 S30 P31 N32 Q34 R35 V36 R37 N41 G42 T43 H44 K45 R46 T51 K55 R61
Binding residue
(residue number reindexed from 1)
A1 A2 V3 K9 R10 P11 F13 G14 H15 V17 P18 W19 S20 K21 K22 K23 N25 R26 R27 W28 S29 P30 N31 Q33 R34 V35 R36 N40 G41 T42 H43 K44 R45 T50 K54 R60
External links