Structure of PDB 8upo Chain w Binding Site BS01 |
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>8upo Chain a (length=2880)
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gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacau cuaaguaccccgaggaaaagaaaucaaccgagauucccccaguagcggcg agcgaacggggagcagcccagagccugaaucaguguguguguuaguggaa gcgucuggaaaggcgcgcgauacagggugacagccccguacacaaaaaug cacaugcugugagcucgaugaguagggcgggacacgugguauccugucug aauauggggggaccauccuccaaggcuaaauacuccugacugaccgauag ugaaccaguaccgugagggaaaggcgaaaagaaccccggcgaggggagug aaaaagaaccugaaaccguguacguacaagcagugggagcacgcuuaggc gugugacugcguaccuuuuguauaaugggucagcgacuuauauucuguag caagguuaaccgaauaggggagccgaagggaaaccgagucuuaacugggc guuaaguugcaggguauagacccgaaacccggugaucuagccaugggcag guugaagguuggguaacacuaacuggaggaccgaaccgacuaaugaaaaa uuagcggaugacuuguggcugggggugaaaggccaaucaaaccgggagau agcugguucuccccgaaagcuauuuagguagcgccucgugaauucaucuc cggggguagagcacuguuucggcaagggggucaacccgacuuaccaaccc gaugcaaacugcgaauaccggagaauguuaucacgggagacacacggcgg ggcuaacguccgucgugaagagggaaacaacccagaccgccagcuaaggu cccaaagucaugguuaagugggaaacgaugugggaaggcccagacagcca ggauguuggcuuagaagcagccaucauuuaaagaaagcguaauagcucac uggucgagucggccugcgcggaagauguaacggggcuaaaccaugcaccg aagcugcggcagcgacgcuuaugcguuguuggguaggggagcguucugua agccugcgaaggugugcugugaggcaugcuggagguaucagaagugcgaa ugcugacauaaguaacgauaaagcgggugaaaagcccgcucgccggaaga ccaaggguuccuguccaacguuaaucggggcagggugagucgaccccuaa ggcgaggccgaaaggcguagucgaugggaaacagguuaauauuccuguac uugguguuacugcgaaggggggacggagaaggcuauguuggccgggcgac gguugucccgguuuaagcguguaggcugguuuuccaggcaaauccggaaa aucaaggcugaggcgugaugacgaggcacuacggugcugaagcaacaaau gcccugcuuccaggaaaagccucuaagcaucagguaacaucaaaucguac cccaaaccgacacgguggucagguagagaauaccaaggcgcuugagagaa cucgggugaaggaacuaggcaaaauggugccguaacuucgggagaaggca cgcugauauguaggugaggucccucgcggauggagcugaaaucagucgaa gauaccagcuggcugcaacuguuuauuaaaaacacagcacugugcaaaca cgaaaguggacguauacggugugacgccucccggugccggaagguuaauu gaugggguuagcgcaagcgaagcucuugaucgaagccccgguaaacggcg gccgaacaaacgguccuaagguagcgaaauccuugucggguaaguuccga cugcacgaauggcguaaugauggccaggcugucuccacccgagacucagu gaaauugaacucgcugugagaugcaguguacccgcggcaagacggaaaga ccccguaaccuuacuauagcuugacacugaacauugagccuugaugugua ggauaggugggaggcuuugaaguguggacgccagucugcauggagccgac cuugaaauaccacccuuuaauguuugauguucuaacguugacccguaauc cggguugcggacagugucugguggguaguuugacugggcggucuccuccu aaagaguaacggaggagcacgaagguuggcuaauccuggucggacaucag gagguuagugcaauggcauaagccagcuugacugcgagcgugacggcgcg agcaggugcgaaagcaggucauagugauccggugguucugaauggaaggg ccaucgcucaacggauaaaagguacuccgggauaacaggcgauaccgccc aagaguucauaucgacggcgguguuuggcacucggucggcucaucacauc cuggggcugaaguaggucccaaggguauggcguucgccauuuaaaguggu acgcgagcggguuuagaacgucgugagacagucggucccuaucugccgug ggcgcuggagaacugaggggggcugcuccuaguacgagaggaccggagug gacgcaucacugguguucggguugucaugccaauggcacugcccgguagc uaaaugcggaagagauaagugcugaaagcaucuaagcacgaaacuugccc cgagaugaguucucccugacccuuuaaggguccugaaggaacguugaaga cgacgacguugauaggccggguguguaagcgcagcgaugcguugagcuaa ccgguacuaaugaaccgugaggcuuaaccu |
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PDB | 8upo Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome |
Resolution | 5.5 Å |
Binding residue (original residue number in PDB) | M1 R2 H3 R4 K5 S6 R8 Q9 L10 N11 R12 N13 S14 H16 R17 A19 M20 R22 N23 M24 S27 H31 I34 K35 T36 T37 P39 K40 R45 R46 T53 R63 R64 F67 A68 R71 N73 E74 A77 R90 A91 G92 G93 T95 R96 K99 R103 G105 D106 N107 A108 |
Binding residue (residue number reindexed from 1) | M1 R2 H3 R4 K5 S6 R8 Q9 L10 N11 R12 N13 S14 H16 R17 A19 M20 R22 N23 M24 S27 H31 I34 K35 T36 T37 P39 K40 R45 R46 T53 R63 R64 F67 A68 R71 N73 E74 A77 R90 A91 G92 G93 T95 R96 K99 R103 G105 D106 N107 A108 |
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