Structure of PDB 5mmj Chain w Binding Site BS01

Receptor Information

>5mmj Chain w (length=82) Species: 3562 (Spinacia oleracea)

KPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEEL
KVLLENKPWISQKQMIILLNQATDIINLWQQS

Ligand information

>5mmj Chain a (length=1484)

ucucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuu
aacacaugcaagucggacgggaagugguguuuccaguggcggacggguga
guaacgcguaagaaccugcccuugggaggggaacaacagcuggaaacggc
ugcuaauaccccguaggcugagaagcaaaaggaggaauccgcccgaggag
gggcucgcgucugauuagcuaguuggugagguaauagcuuaccaaggcga
ugaucaguagcugguccgagaggaugaucagccacacugggacugagaca
cggcccagacuccuacgggaggcagcaguggggaauuuuccgcaaugggc
gaaagccugacggagcaaugccgcguggaggcagaaggcccacgggucgu
gaacuucuuuucccggagaagaagcaaugacgguauccggggaauaagca
ucggcuaacucugugccagcagccgcgguaagacagaggaugcaagcguu
auccggaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgc
cgucaaaucccagggcucaacccuggacaggcgguggaaacuaccaagcu
ggaguacgguaggggcagagggaauuuccgguggagcggugaaaugcgua
gagaucggaaagaacaccaacggcgaaagcacucugcugggccgacacug
acacugagagacgaaagcuaggggagcgaaugggauuagauaccccagua
guccuagccguaaacgauggauacuaggcgcugugcguaucgacccgugc
aguguuguagcuaacgcguuaaguaucccgccuggggaguacguucgcaa
gaaugaaacucaaaggaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccg
cgaauccucuugaaagagaggggugccuucgggaacgcggacacaggugg
ugcauggcugucgucagcucgugccguaagguguuggguuaagucccgca
acgagcgcaacccucguguuuaguugccaacguugaguuuggaacccuga
acagacugccggugauaagccggaggaaggugaggaugacgucaagucau
caugccccuuaugcccugggcgacacacgugcuacaauggccgggacaaa
gggucgcgaucccgcgagggugagcuaaccccaaaaacccguccucaguu
cggauugcaggcugcaacucgccugcaugaagccggaaucgcuaguaauc
gccggucagccauacggcggugaauucguucccgggccuuguacacaccg
cccgucacacuaugggagcuggccaugcccgaagucguuaccuuaaccgc
aaggagggggaugccgaaggcagggcuagugacuggagugaagucguaac
aagguagccguacuggaaggugcggcuggaucac

.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<.<<<<<.....>>>>>.>>>>>......<<..
.....<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>
>>......>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>
>>.>>.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>..
....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.......
..>>>>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<
....>>>>..>>>..>>.>>>>>>..<<<<......<<<<<..>>>>>..
...>>>>....<<<<<<..................>>>>>>......<<<
<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>
>>>>..........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<
<<<<.....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>.
..<<<.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>...
...>>>>>>>.>..........<<....>>.>>>>>>>..>>>>..>>>.
..>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...
>>>>>>>>..........<<<<<<..<<<<<<<<<<<........>>>>>
>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....
>>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<
<<<<......<<........>>..........<<<<<<<......<<<<<
<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<
<..<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..
>>>>>>.....<<<<.<<<<<<<...<<<<........>>>>....>>>>
>>>.....<<<<<.....>>>>>........>>>>.........>>>...
>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....
<<<..<<...<<<....>>>...>>....>>>.....>>>>.>>......
<....<<<<<<<........>>>>>>>....>.....>>>>>>....<<<
<<<<..........>>>>>>>......>>...>>>>>>>>>>.>>....<
..<<.<.<<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<..
..>>.>>>>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>
.....<<<<<<<<<....>>>>>>>>>.......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5mmj The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
• Resolution: 3.6 Å
• Binding residue (original residue number in PDB): K102 F103
• Binding residue (residue number reindexed from 1): K11 F12

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0009507 chloroplast
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5mmj, PDBe:5mmj, PDBj:5mmj
• PDBsum: 5mmj
• PubMed: 28007896
• UniProt: P82412|RRP3_SPIOL Small ribosomal subunit protein cS23 (Gene Name=PSRP3)