Structure of PDB 8wql Chain vD Binding Site BS01
Receptor Information
>8wql Chain vD (length=135) Species:
153964
(Arthrospira sp. FACHB-439) [
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LELTEELRTFPINAQGDTAVLSLKEIKKGQQVFNAACAQCHALGVTKTNP
DVNLSPEALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDI
FPKMRNISEDDLYNVAGYILLQPKVRGEQWGGGKY
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
8wql Chain vD Residue 201 [
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Receptor-Ligand Complex Structure
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PDB
8wql
Structure of in situ PBS-PSII supercomplex at 3.5 Angstroms resolution.
Resolution
3.5 Å
Binding residue
(original residue number in PDB)
A61 C62 Q64 C65 H66 T71 T73 N74 V77 L84 R91 I101 Y107 H117 P118
Binding residue
(residue number reindexed from 1)
A36 C37 Q39 C40 H41 T46 T48 N49 V52 L59 R66 I76 Y82 H92 P93
Annotation score
4
External links
PDB
RCSB:8wql
,
PDBe:8wql
,
PDBj:8wql
PDBsum
8wql
PubMed
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