Structure of PDB 8whx Chain v Binding Site BS01

Receptor Information
>8whx Chain v (length=31) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSVIKKRRKRMSKKKHRKLLRRTRVQRRKLG
Ligand information
>8whx Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucaggacgaacgcuggcggcgugcuuaacac
augcaagucgaacggaaaggcccuuucggggguacucgaguggcgaacgg
gugaguaacacgugggugaucugcccugcacuuugggauaagccugggaa
acugggucuaauaccgaauacacccugcuggucgcauggccugguagggg
aaagcuuuugcggugugggaugggcccgcggccuaucagcuuguuggugg
ggugauggccuaccaaggcgacgacggguagccggccugagagggugacc
ggccacacugggacugagauacggcccagacuccuacgggaggcagcagu
ggggaauauugcacaaugggcgcaagccugaugcagcgacgccgcgugag
ggaugacggccuucggguuguaaaccucuuucagcacagacgaagcgcaa
gugacgguaugugcagaagaaggaccggccaacuacgugccagcagccgc
gguaauacguaggguccgagcguuguccggaauuacugggcguaaagagc
ucguaggugguuugucgcguuguucgugaaaacucacagcuuaacugugg
gcgugcgggcgauacgggcagacuagaguacugcaggggagacuggaauu
ccugguguagcgguggaaugcgcagauaucaggaggaacaccgguggcga
aggcgggucucugggcaguaacugacgcugaggagcgaaagcguggggag
cgaacaggauuagauacccugguaguccacgccguaaacgguggguacua
gguguggguuuccuuccuugggauccgugccguagcuaacgcauuaagua
ccccgccuggggaguacggccgcaaggcuaaaacucaaaggaauugacgg
gggcccgcacaagcggcggagcauguggauuaauucgaugcaacgcgaag
aaccuuaccuggguuugacaugcacaggacgccggcagagaugucgguuc
ccuuguggccugugugcagguggugcauggcugucgucagcucgugucgu
gagauguuggguuaagucccgcaacgagcgcaacccuugucucauguugc
cagcacguuaugguggggacucgugagagacugccggggucaacucggag
gaagguggggaugacgucaagucaucaugccccuuauguccagggcuuca
cacaugcuacaauggccgguacaaagggcugcgaugccgugagguggagc
gaauccuuucaaagccggucucaguucggaucggggucugcaacucgacc
ccgugaagucggagucgcuaguaaucgcagaucagcaacgcugcggugaa
uacguucccgggccuuguacacaccgcccgucacgucaugaaagucggua
acacccgaagccgguggccuaacccuuguggagggagccgucgaaggugg
gaucggcgauugggacgaagucguaacaagguagccguaccggaaggugc
ggcuggaucaccucc
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<..<<<<<<<....>>>>>.>>>..>>>>>......
<<........<<<<<<<..<<...<<<<<<<<<<<<.....<<<<<<...
.>>>>>>......>>>>.....<<<<<<<<<<<<..>>>>>.>>>>>>>.
...<<....>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>
>.........<<<...<<<<<....>>>>.>>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<.<<<<<......<<....
>>.......>>>>>....>..<<<<<(((...<<<<<.....<<.)))>>
.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<
<<...<<<.<<<<<<<.<<<<<<<<<<.....<<<<<<<.....>>>>>>
>...>>>>>>>..>>>>>>>>>>...<<<<<<<<...<<<<<<<....<<
<<<<<<<..<<<......>>>.....>>>>>>>>>...........<<..
..>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<...<
<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<..
<<<<<<<<<<<<.......>>>>>>>>>>>>...<<..))>>.....>>>
>>>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.
<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>...
.......<<<<<<<......<<<<<<<...<<<<<<<....>>>>>>>.<
<.....>>.>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<..
..>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<....<
<..<<<......>>>>>.....>>>>>>.....<<<<<.....>>>>>..
......>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.
>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>
....>>>......>>>>>>>......<....<<<<<<<........>>>>
>>>....>.....>>>>>>....<<<<<<<..........>>>>>>>...
...>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<.
.<<<<....<.<<<<..<<<..<<.....>>.>>>.>>>>.>...>>>>.
.>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>
>>>>...........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8whx Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
G2 S3 I5 K6 K7 R8 R9 K10 R11 M12 K14 K15 K16 H17 R18 K19 L20 R22 R23 R25
Binding residue
(residue number reindexed from 1)
G1 S2 I4 K5 K6 R7 R8 K9 R10 M11 K13 K14 K15 H16 R17 K18 L19 R21 R22 R24
Enzymatic activity
Enzyme Commision number ?
External links