Structure of PDB 5x8r Chain v Binding Site BS01

Receptor Information

>5x8r Chain v (length=190) Species: 3562 (Spinacia oleracea)

SSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY
SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIA
TTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPG
TSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA

Ligand information

>5x8r Chain a (length=1480)

ucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuuaa
cacaugcaagucggacgggaaguguuuccaguggcggacgggugaguaac
gcguaagaaccugcccuugggaggggaacaacagcuggaaacggcugcua
auaccccguaggcugagaagcaaaaggaggaauccgcccgaggaggggcu
cgcgucugauuagcuaguuggugagguaauagcuuaccaaggcgaugauc
aguagcugguccgagaggaugaucagccacacugggacugagacacggcc
cagacuccuacgggaggcagcaguggggaauuuuccgcaaugggcgaaag
ccugacggagcaaugccgcguggaggcagaaggcccacgggucgugaacu
ucuuuucccggagaagaagcaaugacgguauccggggaauaagcaucggc
uaacucugugccagcagccgcgguaagacagaggaugcaagcguuauccg
gaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgccguca
aaucccagggcucaacccuggacaggcgguggaaacuaccaagcuggagu
acgguaggggcagagggaauuuccgguggagcggugaaaugcguagagau
cggaaagaacaccaacggcgaaagcacucugcugggccgacacugacacu
gagagacgaaagcuaggggagcgaaugggauuagauaccccaguaguccu
agccguaaacgauggauacuaggcgcugugcguaucgacccgugcagugu
uguagcuaacgcguuaaguaucccgccuggggaguacguucgcaagaaug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccgcgaau
ccucuugaaagagaggggugccuucgggaacgcggacacagguggugcau
ggcugucgucagcucgugccguaagguguuggguuaagucccgcaacgag
cgcaacccucguguuuaguugccaacguguuuggaacccugaacagacug
ccggugauaagccggaggaaggugaggaugacgucaagucaucaugcccc
uuaugcccugggcgacacacgugcuacaauggccgggacaaagggucgcg
aucccgcgagggugagcuaaccccaaaaacccguccucaguucggauugc
aggcugcaacucgccugcaugaagccggaaucgcuaguaaucgccgguca
gccauacggcggugaauucguucccgggccuuguacacaccgcccgucac
acuaugggagcuggccaugcccgaagucguuaccuuaaccgcaaggaggg
ggaugccgaaggcagggcuagugacuggagugaagucguaacaagguagc
cguacuggaaggugcggcuggaucaccucc

.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<<<<<..>>>>>.>>>>>......<<.......
<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>>>...
...>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>>>.>>
.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>......>
>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.........>>>
>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<....>
>>>..>>>..>>.>>>>>>..<<<<......<<<<<..>>>>>.....>>
>>...<<<<<<<..................>>>>>>>.....<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<<<<<.
....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>...<<<
.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>......>>
>>>>>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<........>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<......<<<<<<<..<
<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<...<<<<.....>>>>....>>>>>>>.....
<<<<<.....>>>>>........>>>>.........>>>...>>>>>>>>
>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....<<<..<<.
..<<<....>>>...>>....>>>.....>>>>.>>......<....<<<
<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<....
......>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<
<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<....>>.>>>
>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>.....<<<
<<<<<<....>>>>>>>>>...........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5x8r Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
• Resolution: 3.7 Å
• Binding residue (original residue number in PDB): Y25 F65 N96 I97 R194 N196
• Binding residue (residue number reindexed from 1): Y17 F57 N88 I89 R186 N188

Gene Ontology

Molecular Function

• GO:0003676 nucleic acid binding
• GO:0003723 RNA binding

External links

• PDB: RCSB:5x8r, PDBe:5x8r, PDBj:5x8r
• PDBsum: 5x8r
• PubMed: 28582576
• UniProt: P82277|RRP2_SPIOL Small ribosomal subunit protein cS22 (Gene Name=PSRP2)