Structure of PDB 7osa Chain uS12 Binding Site BS01

Receptor Information
>7osa Chain uS12 (length=144) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKG
IVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDE
VLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS
Ligand information
>7osa Chain 18S (length=1717) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauacagugaaacugcgaauggcucauuaa
aucaguuaucguuuauuugauaguucccuacaugguauaacugugguaau
ucuagagcuaauacaugcuuaaaaucucagagauguauuuauuagauaaa
aagaugauucauaauaacuuuucgaaucgcauggccuugugcuggcgaug
guucauucaaauuucugcccuaucaacuuucgaugguaggauaguggccu
accaugguuucaacggguaacggggaauaaggguucgauuccggagaggg
agccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauu
acccaauccuaauucagggagguagugacaauaaauaacgauacagggcc
cauucgggucuuguaauuggaaugaguacaauguaaauaccuuaacgagg
aacaauuggagggcaagucuggugccagcagccgcgguaauuccagcucc
aauagcguauauuaaaguuguugcaguuaaaaagcucguaguugaacuuu
gggcccgguuggccggucggauuuccaacggggccuuuccuucuggcuaa
ccuggcgaaccaggacuuuuacuuugaaaaaauuagaguguucaaagcag
gcguauugcucgaauauauuagcauggaauaauagaauaggacguuuggu
ucuauuuuucuaggaccaucguaaugauuaauagggacggucgggggcau
caguauucaauugucagaggugaaauucuuggauuuauugaagacuaacu
acugcgaaagcauuugccaaggacguuuucauuaaucaagaacgaaaguu
aggggaucgaagaugaucagauaccgucguagucuuaaccauaaacuaug
ccgacuagggaucgggugguguuuuuuuaaugacccacucggcaccuuac
gagaaaucaaagucuuuggguucuggggggaguauggucgcaaggcugaa
acuuaaaggaauugacggaagggcaccaccaggaguggagccugcggcuu
aauuugacucaacacggggaaacucaccagguccagacacaauaaggauu
gacagauugagagcucuuucuugauuuugugggugguggugcauggccgu
ucuuaguugguggagugauuugucugcuuaauugcgauaacgaacgagac
cuuaaccuacuaaauaguggugcuagcauuugcugguuauccacuucuua
gagggacuaucgguuucaagccgauggaaguuugaggcaauaacaggucu
gugaugcccuuagacguucugggccgcacgcgcgcuacacugacggagcc
agcgagucuaaccuuggccgagaggucuugguaaucuugugaaacuccgu
cgugcuggggauagagcauuguaauuauugcucuucaacgaggaauuccu
aguaagcgcaagucaucagcuugcguugauuacgucccugcccuuuguac
acaccgcccgucgcuaguaccgauugaauggcuuagugaggccucaggau
cugcuuagagaagggggcaacuccaucucagagcggagaauuuggacaaa
cuuggucauuuagaggaacuaaaagucguaacaagguuuccguaggugaa
ccugcggaaggaucauu
...<<<<<.[.((((>>>>><<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<......>>...>>.>>......<<......
..<<<..<<..<<....<<<............<<......<<.<<<....
.>>>.>>......>>........<<<<...>>>>....<<<<<<.....[
...........>>>>>>.........<<<<..<<<.....>>>.>>>>..
..>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>
>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.
<<<..........>>>.>>.<.<<....>>.>...>>>>>>.........
<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<....
..........>>>>>.>>>......<<..<...........>..>>....
.....<<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>
>>..>>>>>>>>>>.........<<<((.....<.<<...<<<.<<....
<<<<.<.<<..................>>..>>>>>....<<<..<....
.........>..>>>...<<<<<.<<.......<<...<.......>..<
<<.....>>>....>>......>>.>>..>>>.........<<...<.<<
<<<<....].>>>>>>.>..>>.....>>....<<<<<<.<<...<<<<.
.<<..<<<<<<.<...<<<......>>>......>.>>>>>>..>>....
..<<<....>>>..>>>>...>>>>>.>>>...>>>...>>.>....<<<
<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>..........<
<<.<<.<<<..<<<<<<<<.<<<........>>>>>>>>>>>..>>>...
<<..))>>...>>.....>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<.<..
....<<........>>..........<<<<<.<....<<<<<........
<<.<<<........>>>.>>......>>>>>...<<.<<<..<<.<<<<<
<....<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<
<<<<.<<..<<<<..<<<<<.<<<<<<....>>>>>>...>>>>>..>>>
>.>>....<<<<<<.....>>>>>>.......>>>>>....>>>.>>>..
...>>>>>>>.....>.>>>>>...>..>>>>.>>>.....<<<<<<<..
....<<.....<<..<<<<....>>>>..>>....>>.......>>>>>>
>...........<<<<<<..........>>>>>>..........>>>>>>
....<<<<<<<<.......>>>>>>>>......>>...>>>>>>>>>>.>
>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<.<<......<
<<<<<<.<<...<........>.....>>.>>>>>>>......>>.>..>
>>.>>>>>>>>...>>.>>>>...>.>>...>.....<<<<<<<<<....
>>>>>>>>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7osa Accuracy mechanism of eukaryotic ribosome translocation.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		G2 K3 G4 K5 P6 R7 G8 N10 R13 K14 R19 R20 N22 R23 W24 A25 E26 K30 L33 F38 S46 S47 H48 A49 K50 K62 Q63 N65 S66 A67 I68 R69 K70 K78 F86 P88 N89 D90 G91 L103 G106 G108 R109 K110 K112 K114 D116 R121 K123 K126 S131 L133
Binding residue
(residue number reindexed from 1)		G1 K2 G3 K4 P5 R6 G7 N9 R12 K13 R18 R19 N21 R22 W23 A24 E25 K29 L32 F37 S45 S46 H47 A48 K49 K61 Q62 N64 S65 A66 I67 R68 K69 K77 F85 P87 N88 D89 G90 L102 G105 G107 R108 K109 K111 K113 D115 R120 K122 K125 S130 L132
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 11:56:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7osa', asym_id = 'uS12', bs = 'BS01', title = 'Accuracy mechanism of eukaryotic ribosome translocation.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7osa', asym_id='uS12', bs='BS01', title='Accuracy mechanism of eukaryotic ribosome translocation.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412,0015935', uniprot = '', pdbid = '7osa', asym_id = 'uS12'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015935', uniprot='', pdbid='7osa', asym_id='uS12')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>