Structure of PDB 7osm Chain uS11 Binding Site BS01

Receptor Information

>7osm Chain uS11 (length=127) Species: 4932 (Saccharomyces cerevisiae)

SQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAA
MLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGL
RIGRIEDVTPVPSDSTRKKGGRRGRRL

Ligand information

>7osm Chain 18S (length=1732)

uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauacagugaaacugcgaauggcucauuaa
aucaguuaucguuuauuugauaguucccuacaugguauaacugugguaau
ucuagagcuaauacaugcuuaaaaucucagagauguauuuauuagauaaa
aaugaugauucauaauaacuuuucgaaucgcauggccuugugcuggcgau
gguucauucaaauuucugcccuaucaacuuucgaugguaggauaguggcc
uaccaugguuucaacggguaacggggaauaaggguucgauuccggagagg
gagccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaau
uacccaauccuaauucagggagguagugacaauaaauaacgauacagggc
ccauucgggucuuguaauuggaaugaguacaauguaaauaccuuaacgag
gaacaauuggagggcaagucuggugccagcagccgcgguaauuccagcuc
caauagcguauauuaaaguuguugcaguuaaaaagcucguaguugaacuu
ugggcccgguuggccgguauuuccaacggggccuuuccuucuggcuaacc
uugaguccuuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauu
agaguguucaaagcaggcguauugcucgaauauauuagcauggaauaaua
gaauaggacguuugguucuauuuuucuaggaccaucguaaugauuaauag
ggacggucgggggcaucaguauucaauugucagaggugaaauucuuggau
uuauugaagacuaacuacugcgaaagcauuugccaaggacguuuucauua
aucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguaguc
uuaaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugac
ccacucggcaccuuacgagaaaucaaagucuuuggguucuggggggagua
uggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccagga
guggagccugcggcuuaauuugacucaacacggggaaacucaccaggucc
agacacaauaaggauugacagauugagagcucuuucuugauuuugugggu
gguggugcauggccguucuuaguugguggagugauuugucugcuuaauug
cgauaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcu
gguuauccacuucuuagagggacuaucgguuucaagccgauggaaguuug
aggcaauaacaggucugugaugcccuuagacguucugggccgcacgcgcg
cuacacugacggagccagcgagucuaaccuuggccgagaggucuugguaa
ucuugugaaacuccgucgugcuggggauagagcauuguaauuauugcucu
ucaacgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacg
ucccugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuu
agugaggccucaggaucugcuuagagaagggggcaacuccaucucagagc
ggagaauuuggacaaacuuggucauuuagaggaacuaaaagucguaacaa
gguuuccguaggugaaccugcggaaggaucau

...<<<<<.[.((((>>>>><<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<......>>...>>.>>......<<......
..<<<..<<..<<....<<<............<<......<<.<<<....
.>>>.>>......>>.........<<.....>>.....<<<<<<......
[...........>>>>>>.........<<<<..<<<.....>>>.>>>>.
...>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>
>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<
.<<<..........>>>.>>.<.<<....>>.>...>>>>>>........
.<<<....<<<.....>>>..>>>..>....>.>.....<<<.<<.<...
..........>..>>..>>>......<<..<...........>..>>...
......<<<<<((......<<<<.....<<..))>>.......>>>>.>>
>>>..>>>>>>>>>>.........<<<((.....<.<<...<<<.<<...
.<<<<<<.<<<<<.........>>>>>.>>>>>>.....<<<<<......
....<..........>.........>>>>>....<<<<<.<<.......<
<...<.......>..<<<.....>>>....>>......>>.>>..>>>..
.......<<...<<<<<<<<....].>>>>>>>>..>>.....>>....<
<<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>......
>.>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...>
>>...>>.>....<<<<<<<...<...<<<<.........>>>>...>>>
>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<........>>>
>>>>>>>>..>>>...<<..))>>...>>.....>>>.>>>.<<<.....
.<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<
<<..<<<.<<<<........<<........>>..........<<<<<...
...<<<<<........<<.<<<........>>>.>>......>>>>>...
<<.<<<....<<<<<<.....<<<.<<<<......>>...<<<......>
>>...>>.>>>....<<<<..<<..<<<<..<<<<<.<<<<<<....>>>
>>>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>........>
>>>.....>>.>>>...>...>>>>>.......>>>>>......>>>>.>
>>.....<<<<<<<......<<.....<<..<<<<....>>>>..>>...
.>>.......>>>>>>>...........<<<<<<..........>>>>>>
..........>>>>>>....<<<<<<<<.......>>>>>>>>......>
>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.
<<<..<.<<......<<<<<<..........................>>>
>>>......>>.>..>>>.>>>>>>>>...>>.>>>>...>.>>...>..
...<<<<<<<<<....>>>>>>>>>.......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7osm Accuracy mechanism of eukaryotic ribosome translocation.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): R18 Y20 N24 D25 F27 H29 S34 K36 E37 T38 R41 T43 G45 M46 K49 D51 R52 E54 G88 P120 V121 P122 S123 D124 S125 T126 R127 K128 K129 G130 G131 R132 R133 R135 R136 L137
• Binding residue (residue number reindexed from 1): R8 Y10 N14 D15 F17 H19 S24 K26 E27 T28 R31 T33 G35 M36 K39 D41 R42 E44 G78 P110 V111 P112 S113 D114 S115 T116 R117 K118 K119 G120 G121 R122 R123 R125 R126 L127

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Dec 2 20:17:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7osm', asym_id = 'uS11', bs = 'BS01', title = 'Accuracy mechanism of eukaryotic ribosome translocation.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7osm', asym_id='uS11', bs='BS01', title='Accuracy mechanism of eukaryotic ribosome translocation.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7osm', asym_id = 'uS11'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7osm', asym_id='uS11')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>