Structure of PDB 7nwg Chain u3 Binding Site BS01

Receptor Information
>7nwg Chain u3 (length=153) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRI
TVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE
IVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG
AVE
Ligand information
>7nwg Chain 51 (length=3626) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucagaucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaaccaggauucccucaguaacggcgagugaac
agggaagagcccagcgccgaauccccgccccgcggcggggcgcgggaaau
guggcguacggaagacccacuccccggcgccggggggcccaaguccuucu
gaucgaggcccagcccguggacggugugaggccgguagcggcccccggcg
cgccgggcccgggucuucccggagucggguugcuugggaaugcagcccaa
agcgggugguaaacuccaucuaaggcuaaauaccggcacgagaccgauag
ucaacaaguaccguaagggaaaguugaaaagaacuuugaagagagaguuc
aagagggcgugaaaccguuaagagguaaacgggugggguccgcgcagucc
gcccggaggauucaacccggcggcgcgguccggccgugccggcggggcgg
aucucccgcucccgucggcgggggaccgccccccggccggcgaccggccg
ccgccgggcgcauuuccaccgcggcggugcgccgcgaccggcuccgggac
ggcugggaaggccccggcggggaagguggcccgggggccccggguguuac
agccccgccccggcagcagcagcucgccgaaucccggggccgagggagcg
agacccgugcgccgcgcucuccccccucgggggggccgggccaccccucc
cacggcgcgaccgcucucccacccggggggcggggcggacuguccccagu
gcgccccgggcgggucgcgccgucgggcccgggggagguucucucggggc
cacgcgagcgcacggggucggcggcgaugucggcuacccacccgacccgu
cuugaaacacggaccaaggagucuaacacgugcgcgagucgggggcuacg
aaagccgccguggcgcaaugaaggugaaggccggcggcgcgccgccggcc
gaggugggaucccgaggccuuccaguccgccgagggcgcaccaccggccc
gucucgcccgccgcgccggggagguggagcacgagcgcacguguuaggac
ccgaaagauggugaacuaugccugggcagggcgaagccagaggaaacucu
gguggagguccguagcgguccugacgugcgaaucggucguccgaccuggg
uauaggggcgaaagacuaaucgaaccaucuaguagcugguucccuccaaa
guuucccucaggauagcuggcgcucuccgcaguuuuauccgguaaagcga
augauuagaggucuuggggccgaaacgaucucaaccuauucucaaacuuu
aaauggguaagaagcccggcucgcugguguggagccgggcguggaaugcg
agugccuagugggccacuuuugguaagcagaacuggcgcugcgggaugaa
ccgaacgccggguuaaggcgcccgaugccgacgcucaucagaccccagaa
aagguguugguugauauagacagcaggaugguggccauggaagucggaau
ccgcuaaggaguguguaacaacucaccugccgaaucaacuagcccugaaa
auggauggcgcuggagcgucgggcccauacccggccgucgcuggcagucg
gcagagcgagaaagagaguggcgcggacgcuacgccgcgacgaguaggag
ggccgcugcggugagccuugaagccuagggcgcgggcccggguggagccg
ccgcaggugcagaucuuggugguaguagcaaauauucaaacgagaacuuu
gaaggccgaaguggagaaggguuccaugugaacagcaguugaacaugggu
cagucgguccugagagaugggcgagcgccguuccgaagggacgggcgaug
gccuccguugcccucagccgaucgaaagggagucggguucagauccccga
auccggaguggcggagaugggcgccgcgaggcguccagugcgguaacgcg
accgaucccggagaagccggcgggagccccggggagaguucucuuuucuu
ugugaagggcagggcgcccuggaauggguucgccccgagagaggggcccg
ugccuuggaaagcgucgcgguuccggcggcguccggugagcucucgcugg
cccuugaaaauccgggggagaggguguaaaucucgcgccgggccguaccc
auauccgcagcaggucuccaaggugaacagccucuggcauguuggaacaa
uguagguaagggaagucggcaagccggauccguaacuucgggauaaggau
uggcucuaagggcuggcagccgacuuagaacuggugcggaccaggggaau
ccgacuguuuaauuaaaacaaagcaucgcgaaggcccgcggcggguguug
acgcgaugugauuucugcccagugcucugaaugucaaagugaagaaauuc
aaugaagcgcggguaaacggcgggaguaacuaugacucucuuaagguagc
caaaugccucgucaucuaauuagugacgcgcaugaauggaugaacgagau
ucccacugucccuaccuacuauccagcgaaaccacagccaagggaacggg
cuuggcggaaucagcggggaaagaagacccuguugagcuugacucuaguc
uggcacggugaagagacaugagagguguagaauaagugggaggcccgggc
cgccggugaaauaccacuacucugaucguuuuuucacugacccggugagg
cgggggggcgagccgggcucucgcuucuggcgccaagcgcccggccggcc
gggcgcgacccgcuccggggacagugccagguggggaguuugacuggggc
gguacaccugucaaacgguaacgcagguguccuaaggcgagcucagggag
gacagaaaccucccguggagcagaagggcaaaagcucgcuugaucuugau
uuucaguacgaauacagaccgugaaagcggggccucacgauccuucugac
cuuuuggguuuuaagcaggaggugucagaaaaguuaccacagggauaacu
ggcuuguggcggccaagcguucauagcgacgucgcuuuuugauccuucga
ugucggcucuuccuaucauugugaagcagaauucaccaagcguuggauug
uucacccacuaauagggaacgugagcuggguuuagaccgucgugagacag
guuaguuuuacccuacugaugauguguuguugccaugguaauccugcuca
guacgagaggaaccgcagguucagacauuugguguaugugcuuggcugag
gagccaauggggcgaagcuaccaucugugggauuaugacugaacgccucu
aagucagaaucccgcccaggcggaacgauagcgccggagccucgguuggc
cucggauagccggucccccgcccgggguccggugcggagagcccuucguc
ccgggaaacggggcggccggaaagggggccgcccucucgcccgucacgca
ccgcacguucguggggaaccuggcgcuaaaccauucguagacgaccugcu
ucugggucgggguuucguacguagcagagcagcugcugcgaucuauugaa
agucagcccucgacacaaggguuugu
.........................<<<<<<.....<......>......
>>>>>.>.........<<....>>..<<<<<<.....<<.....>>....
>>>>>>..[[[..<.<<<...<<<.<<<<<<<...>>>>>>>..>>>...
..>>>.>..<<<<<<<<<....<<<..<<<..<<<<<<<<....<<<.<.
....>>>>.....((......<<<.....))>>>...>.>>>>>>>...>
>>..>>>...>>>>>>>>>.......<<<<<<<........>>>>>>>..
...(((((..<<<<<<)))))..]]]........................
..........<<....>>...............<<<......>>>.....
.............................<<<<<<<<..<<<.<....<<
<<<<<<.........<<<<<<<<<<....<<<<<<<.<<<...<<<<<<<
.<<<<<<<<<......>>>>>>>>>>>>>>>>..>>>>>>>...>>>.>>
>>>>>>>>..........>>>.>>>>>...<<<<<<<.<<<<<<<<<<.<
<<<.........<..<<<<<<<......<<<<<<<<.>>>>>>>>.....
..>>>>>>>...>............>>>>...>>>>>>>>>>.....<..
.......>.........<...<<<<<<..>>>>>>.....<<..<<<.<<
<<<<<<<<<<<<<<....<..<<..>>.>.<<<<<<<.<<........>>
.>>>>>>>.>>>.>>>>>>>>>>.>>>...>>>.............>>..
.......>.........>>.>>>>>....>>>>...>>>>>>>>...<<<
........>>>.<<<<<<....<<<.<<<<<<<<<..<<<...<<<<...
..>>>>.....>>>...<<....>>...<<<<<.<<<<..>>>>.>>>>>
..<<<<<...<<<..<<........[...>>..>>>....>>>>>.<<<<
<<<<<.<<<<......>>>>>>>>>>>.>>....>>>>>>>>>.>>>..<
<.<..<<<<<<<.....<<<<<<<<<..<<<....<.<<<<......>>>
>.>.....>>>...<<<..<..<<........>>.>.>>>....>>>>>>
>>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<...
.<.<<<....>>>.><<<<<<<<<<...<<<.<<<<<<<<....<<<...
.<<<....<<<..<<<<.............>>>>>>>....>>>...>>>
....>>>>>>...<<<<<<<<<.<......>>>>>>>>>>....>>>>>>
>>>>>>.>>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......
>>>...<<<<<<<...<<<(((.......<<<<<.....<<.........
.<<<.<<<..<<<.........<<<.........<<.........>>...
............<<......>>.....>>>.....>>>..>>>>>>....
......))).>>...>>>>>..>>>...>>>>>>><<<<<<.<<<.....
................]................>>>>>>>>>....>>>>
>>.<<<<<<<<<<.<<......<<<<.<<<<....>>>>>>>>...>>>>
>>>>>>.>>.....>>>>>><<<....<<.....<<<<<<.......>>>
>>>.<<<......<<<<.<<...<<<<<<...<<.....>>.>>>>>>..
..((<<<<<<...<<....<<<....>>>.............<<<<<<<<
<...>>>>>>>>>........>>....>>>..<<<<<........>>>>>
))<<<<....<<<......<<<<<......>>>>>....<<<....>>>.
......<<<<<<...<<<<<<<<<<<<<<<<<<<<<<<..{{{..>>>>>
>.....<<<<.<<<<.<<<<.....<<<.....>>>.....>>>>>>>>.
.>>>>......<<<<<<<.......>>>>>>>>>>>.>.>>>>>>>>>>>
>.........>>>>>>.................>>>.>>>>.>>>..>>.
....<<......>>>>>>..<<<<.....>>>>..>>>....<<<<....
.<<<<<<<.<<...............<<<<<...............>>>>
><<.<<<<<<<<<<<.>>>>>..>>>>>>.>>............<<<<<<
<<<..<<...........>>..<<<<<<<....<<<<.....>>>>....
..>>>>>>>....<..<<<..<<<<<<....<<<.....<<<<....>>>
>.....>>>.>>>>..>>>>>...<<.........>>...........<.
..........<<<<<.......>>>>>.....>.....>.....>>.>>>
>>>>.....>>.>>>>>>>..>>>>>>...>>>....<<<<.........
.>>>>.....[[[[..{{{.{{......[[[[....[[[..<<<<..<<<
<<<<<<.<<<<<<....<<.<<<<..........<<<.<...<<<..>>>
.............>.>>>.>>>>.>>.....>>>>>>...<<<<<.....
<<<<.....<........>..................<<<<<<<<..>>>
>>>>>...>>>>..>>>>>....>>>>>>>>>...>>>>...<<<.....
>>>..<<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<
<.......>>>>>>.....<<.[.(((>>....>>>>>>>...<<<.<<<
<<.......>>>>.>>>>.<<<....>>>.>>)))]......((((((..
(((..>>>>>>.)))))))))..........]]].....]]]].......
<<.<.<.<<<<<<...<.........>...>>>>>>...>>.>.>.....
..<<<<<.<<<<<...<...<<<<<......>>>>>.....>.<<<....
.....>>>......>>>>..>...>>>.>>....<<<.<<<....>>>..
>>>....}}..}}}.]]]]......<<<<<<....<<<..<.<<<<<...
..............>>>>>.><<<<.....<<<....<<..<.<<<.}}}
..>>>....>.>>...>>>....>>>><<<<....<<<<...........
..>>>>....>>>>.>>>.....>>>>>>.<<<<<<<..<<<.....<<<
........<<<<<<..<<<<..>>>>>.>>>>>.......>>>...<<<.
.<<<<....<<<.<<<<<........>>>>>..>>>...>>>>..>>>..
.............>>>..>>.>>>>>.<<<<<.<.............>..
..<<.<<<<<<<.<<.....<<<<.<..<<<<<.>>>>>..>>>>>....
>>....>>>>.>>>.>>..>>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7nwg Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA.
Resolution3.8 Å
Binding residue
(original residue number in PDB)
R16 E21 L56 R57 S76 S78 I82 R90 K94 N97 I98 K99 H100 R119 L121 K130 G134 T135 Q137 S138 V139 G140 R146 H147 P148
Binding residue
(residue number reindexed from 1)
R8 E13 L48 R49 S68 S70 I74 R82 K86 N89 I90 K91 H92 R111 L113 K122 G126 T127 Q129 S130 V131 G132 R138 H139 P140
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 15 11:37:22 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7nwg', asym_id = 'u3', bs = 'BS01', title = 'Blasticidin S inhibits mammalian translation and...s production of protein encoded by nonsense mRNA.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7nwg', asym_id='u3', bs='BS01', title='Blasticidin S inhibits mammalian translation and...s production of protein encoded by nonsense mRNA.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7nwg', asym_id = 'u3'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7nwg', asym_id='u3')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>