Structure of PDB 5x8p Chain u Binding Site BS01

Receptor Information

>5x8p Chain u (length=44) Species: 3562 (Spinacia oleracea)

NEERLLNRFRREVMRAGVIQECKRRRYFENKQEEKKRKHREAAK

Ligand information

>5x8p Chain a (length=1480)

ucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuuaa
cacaugcaagucggacgggaaguguuuccaguggcggacgggugaguaac
gcguaagaaccugcccuugggaggggaacaacagcuggaaacggcugcua
auaccccguaggcugagaagcaaaaggaggaauccgcccgaggaggggcu
cgcgucugauuagcuaguuggugagguaauagcuuaccaaggcgaugauc
aguagcugguccgagaggaugaucagccacacugggacugagacacggcc
cagacuccuacgggaggcagcaguggggaauuuuccgcaaugggcgaaag
ccugacggagcaaugccgcguggaggcagaaggcccacgggucgugaacu
ucuuuucccggagaagaagcaaugacgguauccggggaauaagcaucggc
uaacucugugccagcagccgcgguaagacagaggaugcaagcguuauccg
gaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgccguca
aaucccagggcucaacccuggacaggcgguggaaacuaccaagcuggagu
acgguaggggcagagggaauuuccgguggagcggugaaaugcguagagau
cggaaagaacaccaacggcgaaagcacucugcugggccgacacugacacu
gagagacgaaagcuaggggagcgaaugggauuagauaccccaguaguccu
agccguaaacgauggauacuaggcgcugugcguaucgacccgugcagugu
uguagcuaacgcguuaaguaucccgccuggggaguacguucgcaagaaug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccgcgaau
ccucuugaaagagaggggugccuucgggaacgcggacacagguggugcau
ggcugucgucagcucgugccguaagguguuggguuaagucccgcaacgag
cgcaacccucguguuuaguugccaacguguuuggaacccugaacagacug
ccggugauaagccggaggaaggugaggaugacgucaagucaucaugcccc
uuaugcccugggcgacacacgugcuacaauggccgggacaaagggucgcg
aucccgcgagggugagcuaaccccaaaaacccguccucaguucggauugc
aggcugcaacucgccugcaugaagccggaaucgcuaguaaucgccgguca
gccauacggcggugaauucguucccgggccuuguacacaccgcccgucac
acuaugggagcuggccaugcccgaagucguuaccuuaaccgcaaggaggg
ggaugccgaaggcagggcuagugacuggagugaagucguaacaagguagc
cguacuggaaggugcggcuggaucaccucc

.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<<<<<..>>>>>.>>>>>......<<.......
<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>>>...
...>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>>>.>>
.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>......>
>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.........>>>
>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<....>
>>>..>>>..>>.>>>>>>..<<<<......<<<<<..>>>>>.....>>
>>...<<<<<<<..................>>>>>>>.....<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<<<<<.
....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>...<<<
.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>......>>
>>>>>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<........>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<......<<<<<<<..<
<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<...<<<<.....>>>>....>>>>>>>.....
<<<<<.....>>>>>........>>>>.........>>>...>>>>>>>>
>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....<<<..<<.
..<<<....>>>...>>....>>>.....>>>>.>>......<....<<<
<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<....
......>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<
<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<....>>.>>>
>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>.....<<<
<<<<<<....>>>>>>>>>...........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5x8p Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
• Resolution: 3.4 Å
• Binding residue (original residue number in PDB): R119 F122 N124 E128 R134
• Binding residue (residue number reindexed from 1): R25 F28 N30 E34 R40

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome

External links

• PDB: RCSB:5x8p, PDBe:5x8p, PDBj:5x8p
• PDBsum: 5x8p
• PubMed: 28582576
• UniProt: P82024|RR21_SPIOL Small ribosomal subunit protein bS21c (Gene Name=rps21)