Structure of PDB 8uu5 Chain t Binding Site BS01

Receptor Information
>8uu5 Chain t (length=81) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNADNAKDLYV
EASKKLDSAVSKGLIHKNNAARNKSRLAAKL
Ligand information
>8uu5 Chain a (length=1523) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaaua
caugcaagucgaacgaacggagguccaaaguuaguggcggacgggugagu
aacacgugggcaaccugccuguaaguuggggauaacuccgggaaaccggg
gcuaauaccgaaugauagaguguggcgcaugccacgcucuugaaagaugg
uuucggcuaucgcuuacagaugggcccgcggugcauuagcuaguugguag
gguaauggccuaccaaggcaacgaugcauagccgaccugagagggugauc
ggccacacugggacugagacacggcccagacuccuacgggaggcagcagu
agggaaucuuccgcaauggacgaaagucugacggagcaacgccgcgugua
ugaagaagguuuucggaucguaaaguacuguuguuagagaagaacaagga
uaagaguaacugcuugucccuugacgguaucuaaccagaaagccacggcu
aacuacgugccagcagccgcgguaauacguagguggcaagcguuguccgg
auuuauugggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaa
agcccccggcuuaaccggggagggucauuggaaacuggaagacuggagug
cagaagaggagaguggaauuccacguguagcggugaaaugcguagauaug
uggaggaacaccaguggcgaaggcgacucucuggucuguaacugacgcug
aggcgcgaaagcguggggagcaaacaggauuagauacccugguaguccac
gccguaaacgaugagugcuaaguguuaggggguuuccgccccuuagugcu
gcagcuaacgcauuaagcacuccgccuggggaguacgaccgcaagguuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacca
cucuggagacagagcuuucccgggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuugauuuuaguugccagcauuuaguugggcacucuaaagugacugcc
ggugcaagccggaggaagguggggaugacgucaaaucaucaugccccuua
ugaccugggcuacacacgugcuacaauggaugguacaaagggucgcgaag
ccgcgagguggagccaaucccauaaaaccauucucaguucggauuguagg
cugcaacucgccuacaugaagccggaaucgcuaguaaucguggaucagca
ugccacggugaauacguucccgggccuuguacacaccgcccgucacacca
cgagaguuuguaacacccgaagucgguaggguaaccggagccagccgccg
aaggugggacagauaauuggggugaagucguaacaagguagccguaucgg
aaggugcggcuggaucaccuccu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<..<<...<...>...>>..>>>>>......<<....
....<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>
>......>>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<
<....>>>>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>
>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<<<<<<<.......<.<<<
<<<<........>>>>>>>.>........>>>>>>...>..<<<<<(((.
..<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..
........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<....
...<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<
<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>
>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>.
..>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>
>>..........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>
...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>..
..>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<..
....<<........>>..........<<<<<<<......<<<<<<.....
<<<<<....>>>>>....<<<>>>..>>>>.>>.<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<
<<<....>>>>>........>>>>.........>>>...>>>>>>>>>..
.>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<
<<....>>>...>>....>>>.....>>>>>>>......<....<<<<<<
<........>>>>>>>....>.....>>>>>>....<<<<<<<.......
..>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.
<<<..<<<<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>.
..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<..
..>>>>>>>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8uu5 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		P2 N3 I4 S6 K9 R10 R17 N18 R20 N21 S26 A27 T30 K55 D58 K63 K68 N70 A72 R73 K75 R77
Binding residue
(residue number reindexed from 1)		P1 N2 I3 S5 K8 R9 R16 N17 R19 N20 S25 A26 T29 K54 D57 K62 K67 N69 A71 R72 K74 R76
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu5, PDBe:8uu5, PDBj:8uu5
PDBsum8uu5
PubMed38407413
UniProtA0A660JML5

[Back to BioLiP]