Structure of PDB 6o8z Chain t Binding Site BS01

Receptor Information
>6o8z Chain t (length=81) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAVAAGADNVDALYNE
AVKAVDMAATKGLIHKNKANRDKIRLSKLAK
Ligand information
>6o8z Chain a (length=1523) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuggaaagaggaguggcggacgggugaguaaca
cguggguaaccuacccaucagagggggauaacacuuggaaacaggugcua
auaccgcauaacaguuuaugccgcauggcauaagagugaaaggcgcuuuc
gggugucgcugauggauggacccgcggugcauuagcuaguuggugaggua
acggcucaccaaggccacgaugcauagccgaccugagagggugaucggcc
acacugggacugagacacggcccagacuccuacgggaggcagcaguaggg
aaucuucggcaauggacgaaagucugaccgagcaacgccgcgugagugaa
gaagguuuucggaucguaaaacucuguuguuagagaagaacaaggacguu
aguaacugaacguccccugacgguaucuaaccagaaagccacggcuaacu
acgugccagcagccgcgguaauacguagguggcaagcguuguccggauuu
auugggcguaaagcgagcgcaggcgguuucuuaagucugaugugaaagcc
cccggcucaaccggggagggucauuggaaacugggagacuugagugcaga
agaggagaguggaauuccauguguagcggugaaaugcguagauauaugga
ggaacaccaguggcgaaggcggcucucuggucuguaacugacgcugaggc
ucgaaagcguggggagcaaacaggauuagauacccugguaguccacgccg
uaaacgaugagugcuaaguguuggaggguuuccgcccuucagugcugcag
caaacgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacu
caaaggaauugacgggggcccgcacaagcgguggagcaugugguuuaauu
cgaagcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucu
agagauagagcuuucccuucggggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuuauuguuaguugccaucauuuaguugggcacucuagcgagacugcc
ggugacaaaccggaggaagguggggaugacgucaaaucaucaugccccuu
augaccugggcuacacacgugcuacaaugggaaguacaacgagucgcuag
accgcgaggucaugcaaaucucuuaaagcuucucucaguucggauugcag
gcugcaacucgccugcaugaagccggaaucgcuaguaaucgcggaucagc
acgccgcggugaauacguucccgggccuuguacacaccgcccgucacacc
acgagaguuuguaacacccgaagucggugagguaaccuuuuuggagccag
ccgccuaaggugggauagaugauuggggugaagucguaacaagguagccg
uaucggaaggugcggcuggauca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<..<<.<<<<<.....>>>>>.>>>>>......<<........
<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>>>...
...>>.>.......<<<<<<<<....>>>>>>>>.......<<<<<<...
.>>>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>...
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
...<<<<....>>>>.....>>>>...<<<<<<<.........<<<<<<<
........>>>>>>>..........>>>>>>...>..<<<<<(((...<<
<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>......
....<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<
<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<
...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>
>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>
>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..
........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<
<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>
>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......
<<........>>..........<<<<<<<......<<<<<<.....<<<<
<....>>>>>.....<......>...>>>>.>>.<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<
<<<.....>>>>>........>>>>.........>>>...>>>>>>>>>.
..>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<
<<<....>>>>..>>....>>>.....>>>>>>>......<....<<<<<
<<........>>>>>>>....>.....>>>>>>....<<<<<<<......
...>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<
.<<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.>>>.>
>>>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<
<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6o8z Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.49 Å
Binding residue
(original residue number in PDB)		N3 I4 E5 R10 S14 N18 K20 N21 S23 N26 R29 T30 K34 N51 K55 D58 M59 T62 K63 H67 N69 K70 N72 R73
Binding residue
(residue number reindexed from 1)		N1 I2 E3 R8 S12 N16 K18 N19 S21 N24 R27 T28 K32 N49 K53 D56 M57 T60 K61 H65 N67 K68 N70 R71
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o8z, PDBe:6o8z, PDBj:6o8z
PDBsum6o8z
PubMed33004869
UniProtA0A1B4XQJ7

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