Structure of PDB 4v8t Chain t Binding Site BS01

Receptor Information
>4v8t Chain t (length=380) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDKNILQESVLNKYRTAGQIAQTALKYVTSLINDSYHSKTTQRQLTVPEL
CLLTDSFILTRLEQYYKNKVNERGIAIPTTIDIDQISGGWCPEIDDVTGT
LRPGDLVKITLGVHIDGYTSEVSHTMVIYPVDETKPILQPTGPLLGGKAD
AVAAAHIAMETVVALLSSGITGQLIRTIVDTIARSYNCGVVPGSRVRRIR
RFLAGQNEGIVAEFTNVSAIPSDDFVVQSGEVYLIDLKMASLEHKAGELI
ARPGAYVRDFAQTHILKLKTSRQLLTKIDKQGVYPFKLSHLLKSFRLGMS
EISNNYLCVESPIQIARTSTLVARECNTIVLCDSSVSTTDRPELLRLTGG
SKTCQPSWIHSQHELNPQDSIVQGIFQLAT
Ligand information
>4v8t Chain 1 (length=114) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guagugagggccuuggucagacgcagcgggcgugcuuguggacugcuugg
uggggcuugcucugcuaggcggacuacuugcgugccuguuguagacggcc
uugguacuugcuac
..<<<<<<<.......<.....<<<<<<<<<.<.<....<<...<<<.<<
<<<<.<..>>>.>>>>>>.>...>>....>.>.>>>>>>>>>....>...
....>.>>>>>>..
Receptor-Ligand Complex Structure
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PDB4v8t Cryo-Em Structures of Arx1 and Maturation Factors Rei1 and Jjj1 Bound to the 60S Ribosomal Subunit
Resolution8.1 Å
Binding residue
(original residue number in PDB)		R29 Q33 K81 N82 K83
Binding residue
(residue number reindexed from 1)		R15 Q19 K67 N68 K69
Enzymatic activity
Enzyme Commision number 3.-.-.-
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
GO:0008237 metallopeptidase activity
GO:0046872 metal ion binding
Biological Process
GO:0000055 ribosomal large subunit export from nucleus
GO:0006508 proteolysis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0030687 preribosome, large subunit precursor

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Biological Process
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Cellular Component
External links
PDB RCSB:4v8t, PDBe:4v8t, PDBj:4v8t
PDBsum4v8t
PubMed23142985
UniProtQ03862|ARX1_YEAST Probable metalloprotease ARX1 (Gene Name=ARX1)

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