Structure of PDB 8ur0 Chain s Binding Site BS01 |
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>8ur0 Chain a (length=2880)
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gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacau cuaaguaccccgaggaaaagaaaucaaccgagauucccccaguagcggcg agcgaacggggagcagcccagagccugaaucaguguguguguuaguggaa gcgucuggaaaggcgcgcgauacagggugacagccccguacacaaaaaug cacaugcugugagcucgaugaguagggcgggacacgugguauccugucug aauauggggggaccauccuccaaggcuaaauacuccugacugaccgauag ugaaccaguaccgugagggaaaggcgaaaagaaccccggcgaggggagug aaaaagaaccugaaaccguguacguacaagcagugggagcacgcuuaggc gugugacugcguaccuuuuguauaaugggucagcgacuuauauucuguag caagguuaaccgaauaggggagccgaagggaaaccgagucuuaacugggc guuaaguugcaggguauagacccgaaacccggugaucuagccaugggcag guugaagguuggguaacacuaacuggaggaccgaaccgacuaaugaaaaa uuagcggaugacuuguggcugggggugaaaggccaaucaaaccgggagau agcugguucuccccgaaagcuauuuagguagcgccucgugaauucaucuc cggggguagagcacuguuucggcaagggggucaacccgacuuaccaaccc gaugcaaacugcgaauaccggagaauguuaucacgggagacacacggcgg ggcuaacguccgucgugaagagggaaacaacccagaccgccagcuaaggu cccaaagucaugguuaagugggaaacgaugugggaaggcccagacagcca ggauguuggcuuagaagcagccaucauuuaaagaaagcguaauagcucac uggucgagucggccugcgcggaagauguaacggggcuaaaccaugcaccg aagcugcggcagcgacgcuuaugcguuguuggguaggggagcguucugua agccugcgaaggugugcugugaggcaugcuggagguaucagaagugcgaa ugcugacauaaguaacgauaaagcgggugaaaagcccgcucgccggaaga ccaaggguuccuguccaacguuaaucggggcagggugagucgaccccuaa ggcgaggccgaaaggcguagucgaugggaaacagguuaauauuccuguac uugguguuacugcgaaggggggacggagaaggcuauguuggccgggcgac gguugucccgguuuaagcguguaggcugguuuuccaggcaaauccggaaa aucaaggcugaggcgugaugacgaggcacuacggugcugaagcaacaaau gcccugcuuccaggaaaagccucuaagcaucagguaacaucaaaucguac cccaaaccgacacgguggucagguagagaauaccaaggcgcuugagagaa cucgggugaaggaacuaggcaaaauggugccguaacuucgggagaaggca cgcugauauguaggugaggucccucgcggauggagcugaaaucagucgaa gauaccagcuggcugcaacuguuuauuaaaaacacagcacugugcaaaca cgaaaguggacguauacggugugacgccucccggugccggaagguuaauu gaugggguuagcgcaagcgaagcucuugaucgaagccccgguaaacggcg gccgaacaaacgguccuaagguagcgaaauccuugucggguaaguuccga cugcacgaauggcguaaugauggccaggcugucuccacccgagacucagu gaaauugaacucgcugugagaugcaguguacccgcggcaagacggaaaga ccccguaaccuuacuauagcuugacacugaacauugagccuugaugugua ggauaggugggaggcuuugaaguguggacgccagucugcauggagccgac cuugaaauaccacccuuuaauguuugauguucuaacguugacccguaauc cggguugcggacagugucugguggguaguuugacugggcggucuccuccu aaagaguaacggaggagcacgaagguuggcuaauccuggucggacaucag gagguuagugcaauggcauaagccagcuugacugcgagcgugacggcgcg agcaggugcgaaagcaggucauagugauccggugguucugaauggaaggg ccaucgcucaacggauaaaagguacuccgggauaacaggcgauaccgccc aagaguucauaucgacggcgguguuuggcacucggucggcucaucacauc cuggggcugaaguaggucccaaggguauggcguucgccauuuaaaguggu acgcgagcggguuuagaacgucgugagacagucggucccuaucugccgug ggcgcuggagaacugaggggggcugcuccuaguacgagaggaccggagug gacgcaucacugguguucggguugucaugccaauggcacugcccgguagc uaaaugcggaagagauaagugcugaaagcaucuaagcacgaaacuugccc cgagaugaguucucccugacccuuuaaggguccugaaggaacguugaaga cgacgacguugauaggccggguguguaagcgcagcgaugcguugagcuaa ccgguacuaaugaaccgugaggcuuaaccu |
<<<<<<<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<<... ...<<<<<<.[..(((.>>>.....<<<<<<<..<<<)))..].>>>... ...>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.< <<<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<<....> >......>>>>>.>.........<<....>>..<<<<<<.....<<.... .>>....>>>>>>..<<<..<<<<.<....<<<<<<<<<<<<<.<<<... <<<<<......>>>>>((......<<<.....))>>>...>>>...>>>> >>>>>>>>>..>>>>>........<<<<<<<<.........>>>>>>>>. .....<<<<<..((((>>>>>..>>>......>>.>>>>>>>.>>..... ..........<<....>>....>>.........<<<<.....>>>>.... ..............>>>>>>>>>>>.......<<<<..<<<<<<....>> >>>>..>>>>...<............>.<<<<<<....<<<<<<<<<<<< <..<<<...<<.....>>...>>>...<<....>>..<<<<.....>>>> .....>>>>>>>>>>>>>..<<.<...<<<<<<.....<<<<<<<<<..< <<....<<<<<<......>>>>>>.....>>>...<<<.<<<<<.....> >>>>>>>....>>>>>>>>>...<<<.....>>>......>>>>>>.... ..>.>>..<<<<<<....<<<<<....>>>>>.<<<<<<<<...<<<<<< <<<.....<<<...<<<.<<<<...<<.<<<<.....>>>>..>>...>> >>.>>>..>>.>.....>>>>>>>.>>...>>>>>>>.>...<<<<<<<< <.......>>>>>>>>>....<<<......>>>...<<<<.<<<...<<< (((.....<<<<<<...........<<..<<<<<..<<........<<<< <.<<...<<<<.......>>>>...>>........<<<......>>>..> >>>>....>>..>>>>>.>>...........))).....>>>>>>.>>>. ..>>>>>>><<<<<<<<<....>>>>>>>>>....>>>>>>..<<<<<.. .<<<......<<<<<<<<....>>>>>>>>...>>>..>>>>>....... .>>>>>><......<<.....<<<<<<.......>>>>>><<<<....<< <<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<.<<<... <<<...<<<....>>>...>>>...>>>..<<<<<........>>>>>)) <<<<<<<<<<<<<...<<<<....<<<<..<<<..<<<<<<<<<<<.... [[[...>>>>>><<..<<<<...<<<<<<<<<<<<.<<.....>>>>>>> >>>..>>>>...>>>>...>><..<<<<<....>>>>>...>>>>>>... >>>...>>>>.........>>>>...>>....>>>>>>>>>>>.>>>..> >.....<<.....>>>>>>>.<<<<.....>>>>..>>>>..<<<<.... <<<<<<<<.<<.........<.....<<<<<...............>>>> ><<<<<<.....<<<...<<<<.....>>>>...>>>...>>>>>>.... ........<<<<<<<<<..<<<.........>>>..<<<<<<<.....<< <....>>>.......>>>>>>>.<<<<<.<<..<<<<<<<..<<<....< ...<<<<<..<<....>>...>>>>>.>......>>>>>>>>..>>>>.. <<<<......>>>>.........<..........<<<<<<.....>>>>> >....>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>>>> .....>.....<<<<<.......>>>>>..<<<<<<<<.<<<.<<..... .<.<<..<<<..<<<<<.<<<.<<<<<.<<<<<<<<<<<.<<<<...... .....<<<<<..<<.......<<<<<<<<....>>>>>>>>....>>... .........>>>>>..>>>>.>>>>>>>>>>>...<<<.<<<<<<..... >>>>>>>>>....>>>>>.>>>..>>>>>..<<<<....>>>><<<<<<. ..........>>>>>>..<<...<<<<<<<...<<<<<<.......>>>> >>.....<<...(((>>....>>>>>>>...<<<<..<<<<....>>>>. .>>>>.<<<....>>>.>>))).......<<<<<<<.<<..))))..>>> >>>>>>..............>>>....>>>........<<...<<<<<<. ..<<.......>>...>>>>>>.....>>......<<.<<.<<<<<<..< <<<<<<<<......>>>>>>>..>>.<<<<<....>>>>>.....>>>>> ..>...>>.>>....<.<<<<<....>>>.>>>....>>..>>>>>>>>> >>....<<<<<<<...<<<<..<<<<<<<...............>>>>>> >.<<<<<...<<<<...<<<<<<<<<<<]]].>>>>>>..>>>>>...>> >>.>>>>>...<<<....<<<<<...........>>>>>....>>>.>>> >.......>>>>>>>..<<<<<.....>>>>><....<<..<<<<<.... ...>>>>>....<<<<<<<<..<<....<<<<<....>>>>>...>>... >>>>>.>>>.....>>..>..>>>>>>>>. |
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PDB | 8ur0 Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome |
Resolution | 3.4 Å |
Binding residue (original residue number in PDB) | K2 T3 K7 E9 T24 G26 R27 T30 R37 K39 H47 T65 K68 K72 Y75 H76 H77 T78 H80 I81 I84 K85 R95 R99 A104 K106 G107 M108 K111 P113 L114 R116 R120 N131 H132 A134 Q135 |
Binding residue (residue number reindexed from 1) | K2 T3 K7 E9 T24 G26 R27 T30 R37 K39 H47 T65 K68 K72 Y75 H76 H77 T78 H80 I81 I84 K85 R95 R99 A104 K106 G107 M108 K111 P113 L114 R116 R120 N131 H132 A134 Q135 |
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