Structure of PDB 6w6p Chain s Binding Site BS01

Receptor Information
>6w6p Chain s (length=78) Species: 474186 (Enterococcus faecalis OG1RF) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYD
GRKHVPVYIQEDMVGHKLGEFAPTRTYR
Ligand information
>6w6p Chain a (length=1523) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuggaaagaggaguggcggacgggugaguaaca
cguggguaaccuacccaucagagggggauaacacuuggaaacaggugcua
auaccgcauaacaguuuaugccgcauggcauaagagugaaaggcgcuuuc
gggugucgcugauggauggacccgcggugcauuagcuaguuggugaggua
acggcucaccaaggccacgaugcauagccgaccugagagggugaucggcc
acacugggacugagacacggcccagacuccuacgggaggcagcaguaggg
aaucuucggcaauggacgaaagucugaccgagcaacgccgcgugagugaa
gaagguuuucggaucguaaaacucuguuguuagagaagaacaaggacguu
aguaacugaacguccccugacgguaucuaaccagaaagccacggcuaacu
acgugccagcagccgcgguaauacguagguggcaagcguuguccggauuu
auugggcguaaagcgagcgcaggcgguuucuuaagucugaugugaaagcc
cccggcucaaccggggagggucauuggaaacugggagacuugagugcaga
agaggagaguggaauuccauguguagcggugaaaugcguagauauaugga
ggaacaccaguggcgaaggcggcucucuggucuguaacugacgcugaggc
ucgaaagcguggggagcaaacaggauuagauacccugguaguccacgccg
uaaacgaugagugcuaaguguuggaggguuuccgcccuucagugcugcag
caaacgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacu
caaaggaauugacgggggcccgcacaagcgguggagcaugugguuuaauu
cgaagcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucu
agagauagagcuuucccuucggggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuuauuguuaguugccaucauuuaguugggcacucuagcgagacugcc
ggugacaaaccggaggaagguggggaugacgucaaaucaucaugccccuu
augaccugggcuacacacgugcuacaaugggaaguacaacgagucgcuag
accgcgaggucaugcaaaucucuuaaagcuucucucaguucggauugcag
gcugcaacucgccugcaugaagccggaaucgcuaguaaucgcggaucagc
acgccgcggugaauacguucccgggccuuguacacaccgcccgucacacc
acgagaguuuguaacacccgaagucggugagguaaccuuuuuggagccag
ccgccuaaggugggauagaugauuggggugaagucguaacaagguagccg
uaucggaaggugcggcuggauca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<..<<.<<<<<<...>>>>>>.>>>>>......<<........
<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>>>...
...>>.>.......<<<<<<<<<..>>>>>>>>>.......<<<<<<...
.>>>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>...
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
...<<<<....>>>>.....>>>>...<<<<<<<.........<<<<<<<
........>>>>>>>..........>>>>>>...>..<<<<<(((...<<
<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>......
....<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<
<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<
...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>
>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>
>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..
........<<<<<<..<<<<<<<<<<<<......>>>>>>>>>>>>...<
<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>
>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......
<<........>>..........<<<<<<<......<<<<<<.....<<<<
<....>>>>>................>>>>.>>.<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<
<<<.....>>>>>........>>>>.........>>>...>>>>>>>>>.
..>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<
<<<....>>>>..>>....>>>.....>>>>>>>......<....<<<<<
<<........>>>>>>>....>.....>>>>>>....<<<<<<<......
...>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<
.<<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.>>>.>
>>>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<
<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6w6p Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		K6 F10 W34 R36 R37 Y52 G54 R55 K70 G72 T77 R78 Y80
Binding residue
(residue number reindexed from 1)		K3 F7 W31 R33 R34 Y49 G51 R52 K67 G69 T74 R75 Y77
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 17:45:22 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6w6p', asym_id = 's', bs = 'BS01', title = 'Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6w6p', asym_id='s', bs='BS01', title='Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '6w6p', asym_id = 's'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='6w6p', asym_id='s')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>