Structure of PDB 8uk2 Chain r Binding Site BS01

Receptor Information
>8uk2 Chain r (length=272) Species: 444185 (Simian rotavirus A strain RRV) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
INLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQ
LFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSE
LADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLG
IGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGP
RENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVN
QIIQAMSKRSRSLNSAAFYYRI
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8uk2 Chain r Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8uk2 The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+
Resolution8.0 Å
Binding residue
(original residue number in PDB)		G206 T214 E216
Binding residue
(residue number reindexed from 1)		G152 T160 E162
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8uk2, PDBe:8uk2, PDBj:8uk2
PDBsum8uk2
PubMed38574119
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

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