Structure of PDB 7aor Chain r Binding Site BS01

Receptor Information
>7aor Chain r (length=465) Species: 353153 (Trypanosoma cruzi strain CL Brener) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLASLYVRPPVTCYTDACEAPVAMWNGAIPLKEYVTKLYSHPLEASPTRL
SFNDINSMYCVGNDELMQFFPEGLGGKVMQLMPPGHPRGFLYRKEAHLLN
LFIDKIQHWQAKRNVLSSLTNNRPGFIIDGPKGCGKSALMCQVVHYARSR
NLLTLYVPNAKEWTHGEWCWPSTILPGFFDAPDAARFFLRYFAKANRSTL
LSWRLKCTPNDLPVEQGERQPQNLYELCEWGHQVVAPASIDRQSVCVKFL
MDELSAEKKLPIVIVVDGWNLFSHDTHFRYPHPDFLRTLASLNDDSTDID
LYPQELPRIPASRLGFVRGLNKMILSKDEPNKFFFTCTTRDFKPFDGISG
FPDVETDRFTNSLDEYAPYDAEKDSLFHPIQLGNFDEYEFRAFTRFLVNS
GELAGLGWGPLWHFSSDFERKLYKIGFLSNRNPQGVIDHYHQELVWRYEY
QRTRQKQYLLHRNME
Ligand information
Ligand IDGTP
InChIInChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKeyXKMLYUALXHKNFT-UUOKFMHZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
CACTVS 3.370NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.370NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
OpenEye OEToolkits 1.7.6c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
FormulaC10 H16 N5 O14 P3
NameGUANOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL1233147
DrugBankDB04137
ZINCZINC000060094177
PDB chain7aor Chain r Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7aor Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		G95 K96 V97 Q99 M101 R107 G108 F109 C153 G154 S156 A157 D360
Binding residue
(residue number reindexed from 1)		G76 K77 V78 Q80 M82 R88 G89 F90 C134 G135 S137 A138 D341
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:7aor, PDBe:7aor, PDBj:7aor
PDBsum7aor
PubMed33168716
UniProtQ4DW24

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