Structure of PDB 6wub Chain r Binding Site BS01

Receptor Information
>6wub Chain r (length=66) Species: 474186 (Enterococcus faecalis OG1RF) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLTIA
IKRARIMGLLPFVSDE
Ligand information
>6wub Chain a (length=1121) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuggaaagaggaguggcggacgggugaguaaca
cguggguaaccuacccaucagagggggauaacacuuggaaacaggugcua
auaccgcauaacaguuuaugccgcauggcauaagagugaaaggcgcuuuc
gggugucgcugauggauggacccgcggugcauuagcuaguuggugaggua
acggcucaccaaggccacgaugcauagccgaccugagagggugaucggcc
acacugggacugagacacggcccagacuccuacgggaggcagcaguaggg
aaucuucggcaauggacgaaagucugaccgagcaacgccgcgugagugaa
gaagguuuucggaucguaaaacucuguuguuagagaagaacaaggacguu
aguaacugaacguccccugacgguaucuaaccagaaagccacggcuaacu
acgugccagcagccgcgguaauacguagguggcaagcguuguccggauuu
auugggcguaaagcgagcgcaggcgguuucuuaagucugaugugaaagcc
cccggcucaaccggggagggucauuggaaacugggagacuugagugcaga
agaggagaguggaauuccauguguagcggugaaaugcguagauauaugga
ggaacaccaguggcgaaggcggcucucuggucuguaacugacgcugaggc
ucgaaagcguggggagcaaacaggauuagauacccugguaguccacgccg
uaaacgaugagugcuaaguguuggaggguuuccgcccuucagugcugcag
caaacgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacu
caaaggaauugacgggggcccgucagcucgugucgugagauguuggguua
agucccgcaacgagcgucccgggccuuguacacaccgcccgucacaccac
gagaguuuguaacacccgaagucggugagguaaccuuuuuggagccagcc
gccuaaggugggauagaugauuggggugaagucguaacaagguagccgua
ucggaaggugcggcuggauca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<..<<.<<<<<<...>>>>>>.>>>>>......<<........
<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>>>...
...>>.>.......<<<<<<<<<..>>>>>>>>>.......<<<<<<...
.>>>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>...
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
...<<<<....>>>>.....>>>>...<<<<<<<.........<<<<<<<
........>>>>>>>..........>>>>>>...>..<<<<<(((...<<
<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>......
....<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<
<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<
...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>
>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>
>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..
........<<<<<<..<<<<<<<<<<<<......>>>>>>>>>>>>...<
<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>
>..)))).]<<<<<.<<<<<<....<<<<<<<<<....>>>..<<<<...
...>>>>..>>>>>>.....>>>>>>>>>.>>....<..<<.<.<<<<.<
<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.>>>.>>>
>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<
<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6wub Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		H21 K42 I43 R46 Q56 R57 K64 R65
Binding residue
(residue number reindexed from 1)		H9 K30 I31 R34 Q44 R45 K52 R53
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6wub, PDBe:6wub, PDBj:6wub
PDBsum6wub
PubMed33004869
UniProtQ839Y8|RS18_ENTFA Small ribosomal subunit protein bS18 (Gene Name=rpsR)

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