Structure of PDB 8uu9 Chain q Binding Site BS01

Receptor Information
>8uu9 Chain q (length=81) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDEN
NIAKTGDVVRISETRPLSATKHFRLLEVVEE
Ligand information
>8uu9 Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauac
augcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgug
ggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaauac
cgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggcu
aucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaugg
ccuaccaaggcaacgaugcauagccgaccugagagggugaucggccacac
ugggacugagacacggcccagacuccuacgggaggcagcaguagggaauc
uuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaag
guuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagua
acugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacgu
gccagcagccgcgguaauacguagguggcaagcguuguccggauuuauug
ggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagcccccg
gcuuaaccggggagggucauuggaaacuggaagacuggagugcagaagag
gagaguggaauuccacguguagcggugaaaugcguagauauguggaggaa
caccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcga
aagcguggggagcaaacaggauuagauacccugguaguccacgccguaaa
cgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcuaa
cgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaaa
ggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucgaa
gcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucuggag
acagagcuuucccgggacaaagugacagguggugcaugguugucgucagc
ucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuugau
uuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaag
ccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccugg
gcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgagg
uggagccaaucccauaaaaccauucucaguucggauuguaggcugcaacu
cgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacgg
ugaauacguucccgggccuuguacacaccgcccgucacaccacgagaguu
uguaacacccgaagucgguaggguaaccggagccagccgccgaagguggg
acagauaauuggggugaagucguaacaagguagccguaucggaaggugcg
gcuggaucaccuccu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<<......>>.>>>>>......<<........<<<<
<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......>
>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>>
>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<.......
>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>.......
..<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<
<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<....
....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<.
....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........
<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<<
<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...<
<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>...
........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>..
..<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>......
....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..)
)>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)
))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<..
......>>..........<<<<<<<......<<<<<<<....<<<<<...
.>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<<......<<
<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<
<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....>
>>>>........>>>>.......>.>>>...>>>>>>>>>...>>>>>>>
...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>>
>...>>....>>>.....>>>>>>>......<....<<<<<<<.......
.>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>>
>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<
<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>..
>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>
>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu9 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.1 Å
Binding residue
(original residue number in PDB)
R4 N5 Q6 R7 M19 D20 R39 Y42 K45 T66 R67 P68 S70 A71 T72 K73 H74 R76
Binding residue
(residue number reindexed from 1)
R2 N3 Q4 R5 M17 D18 R37 Y40 K43 T64 R65 P66 S68 A69 T70 K71 H72 R74
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8uu9, PDBe:8uu9, PDBj:8uu9
PDBsum8uu9
PubMed38407413
UniProtA0A0U5ADR4

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