Structure of PDB 8azw Chain q Binding Site BS01

Receptor Information
>8azw Chain q (length=238) Species: 4097 (Nicotiana tabacum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVLVPESVLKKQKRSEEWALVKKQELEAAKKKNTENRKLIYNRAKQYAKE
YEAQERELIQLKREARLKGGFYVDPEAKLLFIIRIRGINAMAPQTKKILQ
LLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSIRELIYKRGYG
KVEKQRIALTDNSVIEQVLGKHGIICIEDLVHEIITVGPHFKEANNFLWP
FQLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN
Ligand information
>8azw Chain C (length=119) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaugcgaucauaccagcacuaacgcaccggaucccaucagaacuccgaa
guuaagcgugcuugggcgagaguaguacuaggaugggugacccccuggga
aguccucguguugcauccc
<<<<<<<<<....<<<<<<<......<<<<<..............>>>..
>>.....>>>>>.>><<<<<.<.....<<<<<..<<....>>.>>>>>..
..>.>>>>>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8azw Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Resolution2.14 Å
Binding residue
(original residue number in PDB)		H128 E131 R218 N219 H220 E223
Binding residue
(residue number reindexed from 1)		H124 E127 R214 N215 H216 E219
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8azw, PDBe:8azw, PDBj:8azw
PDBsum8azw
PubMed37156858
UniProtA0A1S4A5Z2

[Back to BioLiP]