Structure of PDB 7jil Chain q Binding Site BS01

Receptor Information
>7jil Chain q (length=121) Species: 986 (Flavobacterium johnsoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTIQQLVRTGRTQITKKSKSVALDSCPQRRGVCTRVYTTTPKKPNSAMRK
VARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGA
LDTSGVAGRTQRRSKYGAKRP
Ligand information
>7jil Chain 2 (length=1475) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uacgaugaagaguuugauccuggcucaggaugaacgcuagcggcaggcuu
aacacaugcaagucgagggguagagaccggcgcacgggugcguaacgcgu
augcaaucugccuuucacagagggauagcccagagaaauuuggauuaaua
ccucauaguauuauagagcggcaucacuuuauaauuaaagucacaacggu
gaaagaugagcaugcgucccauuagcuaguugguaagguaacggcuuacc
aaggccacgauggguagggguccugagagggagaucccccacacugguac
ugagacacggaccagacuccuacgggaggcagcagugaggaauauugguc
aauggacgcaagucugaaccagccaugccgcgugcaggaugacgguccgg
auuguaaacugcuuuuguacgagaagaaacacuccuauauauaggagcuu
gacgguaucguaagaauaaggaucggcuaacuccgugccagcagccgcgg
uaauacggaggauccaagcguuauccggaaucacuggguuuaaagggucc
guaggcgguuuaguaagucaguggugaaagcccaucgcucaacgguggaa
cggccauugauacugcugaacuugaauuacugggaaguaacuagaauaug
uaguguagcggugaaaugcuuagauauuacauggaauaccaauugcgaag
gcagguuacuaccaguuuauugacgcugauggacgaaagcguggggagcg
aacaggauuagauacccugguaguccacgccguaaacgauggauacuagc
uguugggcgcaaguucaguggcuaagcgaaagugauaaguaucccaccug
gggaguacgaacgcaaguuugaaacucaaaggaauugacgggggcccgca
caagcgguggaacaugugguuuaauucgaugauacgcgaggaaccuuacc
aaggcuuaaaugcagacugcgauuuggaaacagaucucaguuuacaaggu
gcugcaugguugucgucagcucgugccgugaggugucagguuaaguccua
uaacgagcgcaaccccuguuguuaguugccagcgaggaacucuaacaaga
cugccagugcaaacugugaggaagguggggaugucaaaucaucacggccc
uuacgccuugggcuacacacgugcuacaauggccgguacagagagcagcc
acugggugaccaggagcgaaucuauaaagccggucacaguucggaucgga
gucugcaacucgacuccgugaagcuggaaucgcuaguaaucggauaucag
ccaugauccggugaauacguucccgggccuuguacacaccgcccgucaag
ccauggaagcugggggugccugaagucggugaccgcaaggagcugccuag
gguaaaacugguaacuagggcuaagucguaacaagguagccguaccggaa
ggugcggcuggaacaccuccuuucu
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<........>>>>>......<<.......<<<<
<<<<..<<...<<<<<<<.<<<<....<.<<<<......>>>>.>.....
>>>>.....<<<<<<<<<........>>>>>>>>>....<<....>>.>>
>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>
>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<
.........>>>>>>.<<<<....>>>>...>>>>>>.........<<<.
...<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<.<<.>>
.>......>>>>.....<<<<<..........<<<<<....>>>>>....
.......>>>>>.......<<<<<(((...<<<<<.....<<.)))>>..
.....>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<<<
<..<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>>..
..>>>>>>>>..>>>>>>>>>...<<<.<<<<<..<<<<<<<....<<<<
<<<<<..<<<......>>>.....>>>>>>>>>..........<<<....
>>>>>>>>>>.>>>>>..>>>...>>>..>>>>>....<<<<<<...<<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<<<<<
<<<<<<<<....>>>>>>>>>>>>.<<..))>>.....>>>>>>.>>>.<
<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<
<.<<<<<<..<.<<<<<<<<......<<........>>..........<<
<<<<<.....<<.<<<<<<.<<<<<<....>>>>>>.>>>>>>.>><<<.
<<<...<<<<<.......<<<<<<<<<....>>>...<<<......>>>.
..>>>>>>.....<<<..<<<<<<<...<<.....>>....>>>>>>>..
....<<<......>>>..........>>>.......>>>...>>.>>>>>
>...>>>>>>>...>>.>>>>>>.>.....<<<<<<<......<<..<<.
.<<<<....>>>>..>>....>>.....>>>>>>>......<....<<<<
<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.....
.....>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<
<<.<<<..<<<<<...<<<<<..<<.<<<<..<<....>>.>>>>.>>.>
>>>>...>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....
>>>>>>>>>................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7jil Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		P2 T3 Q5 Q6 R9 R12 T13 S21 S26 P28 Q29 R30 R31 K44 N46 S47 R50 K51 Y66 G69 R83 K88 D89 R94 R110 T111 Q112 R113 R114 S115 K116 Y117 A119 K120 R121
Binding residue
(residue number reindexed from 1)		P1 T2 Q4 Q5 R8 R11 T12 S20 S25 P27 Q28 R29 R30 K43 N45 S46 R49 K50 Y65 G68 R82 K87 D88 R93 R109 T110 Q111 R112 R113 S114 K115 Y116 A118 K119 R120
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7jil, PDBe:7jil, PDBj:7jil
PDBsum7jil
PubMed33330920
UniProtA0A0Q8NJJ8

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