Structure of PDB 6ypu Chain q Binding Site BS01

Receptor Information
>6ypu Chain q (length=80) Species: 575584 (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPTAQGQAEKL
RLDADRFAHWVSQGAQPSERVASLAAQAKK
Ligand information
>6ypu Chain 2 (length=894) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaacugaagaguuugaucauggcucagauugaacgcuggcggcaggcuua
acacaugcaagucgagcgggggaagcggaccuagcggcggacgggugagu
aaugcuuaggaaucugccuauuagugggggacaacaucucgaaagggaug
cuaauaccgcauacguccuacgggagaaagcagggccuugcgcuaauaga
ugagccuaagucggauuagcuaguuggugggguaaaggccuaccaaggcg
acgaucuguagcgggucugagaggaugauccgccacacugggacugagac
acggcccagacuccuacgggaggcagcaguggggaauauuggacaauggg
gggaacccugauccagccaugccgcgugugugaagaaggccuuaugguug
uaaagcacuuuaagcgaggaggaggcuacuuuaguuaauaccuagagaua
guggacguuacucgcagaauaagcaccggcuaacucugugccagcagccg
cgguaauacagagggugcgagcguuaaucggauuuacugggcguaaagcg
ugcguaggcggcuuauuaagucggaugugaaauccccgagcuuaacuugg
gaauugcauucgauacuggugagcuagaguaugggagaggaugguagaau
uccagguguagcggugaaaugcguagagaucuggaggaauaccgauggcg
aaggcagccaucuggccuaauacugacgcugagguacgaaagcaugggga
gcaaacaggauuagauacccugguaguccaugccguaaacgaugucuacu
agccguuggggccggcuuuaguggcgcagcuaacgcgauaaguagaccgc
cuggggaguacggucgcaagacuaaaacucaaaugaauugacgg
........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<....
.<<<.<<<..<<<..<<.<<<........>>>.>>>>>......<<....
...<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<......>>>>>
......>>.>.....<<<....>>>....<<<<<..>>>>>>>>>>>>>.
.>>.>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>.
.....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<......
...>>>>>>.<<<<....>>>>...>>>>>>.........<<<...<<<<
<....>>>>.>>>>..>>.>>>>>>..<<<<......<<<<....>>>>.
....>>>>.....<<<<<......<<<<<<<<<<.......>>>>>>.>>
>>........>>>>>.......<<<<<(((...<<<<<.....<<.)))>
>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<
<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>
>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....<
<<<<<<<...<<<......>>>......>>>>>>>>...........<<.
...>>.>>>>>>>..>>>.>>>>>...>>>...>>>>....<<<<<<...
<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<.
.<<<<<<<<<<<<>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>
>.<<<......<<<<....>>>>....>>>..)))).]......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6ypu Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		M1 V2 R5 L6 R8 G9 G10 K12 K13 F16 S24 R25 R28 G30 R31 Q44 Q46 Q63 G64 S68 R70
Binding residue
(residue number reindexed from 1)		M1 V2 R5 L6 R8 G9 G10 K12 K13 F16 S24 R25 R28 G30 R31 Q44 Q46 Q63 G64 S68 R70
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ypu, PDBe:6ypu, PDBj:6ypu
PDBsum6ypu
PubMed32857965
UniProtD0CCR5

[Back to BioLiP]