Structure of PDB 8uu5 Chain p Binding Site BS01

Receptor Information
>8uu5 Chain p (length=87) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKIRLKRMGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLLDPVEVKID
EEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLG
Ligand information
>8uu5 Chain a (length=1523) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaaua
caugcaagucgaacgaacggagguccaaaguuaguggcggacgggugagu
aacacgugggcaaccugccuguaaguuggggauaacuccgggaaaccggg
gcuaauaccgaaugauagaguguggcgcaugccacgcucuugaaagaugg
uuucggcuaucgcuuacagaugggcccgcggugcauuagcuaguugguag
gguaauggccuaccaaggcaacgaugcauagccgaccugagagggugauc
ggccacacugggacugagacacggcccagacuccuacgggaggcagcagu
agggaaucuuccgcaauggacgaaagucugacggagcaacgccgcgugua
ugaagaagguuuucggaucguaaaguacuguuguuagagaagaacaagga
uaagaguaacugcuugucccuugacgguaucuaaccagaaagccacggcu
aacuacgugccagcagccgcgguaauacguagguggcaagcguuguccgg
auuuauugggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaa
agcccccggcuuaaccggggagggucauuggaaacuggaagacuggagug
cagaagaggagaguggaauuccacguguagcggugaaaugcguagauaug
uggaggaacaccaguggcgaaggcgacucucuggucuguaacugacgcug
aggcgcgaaagcguggggagcaaacaggauuagauacccugguaguccac
gccguaaacgaugagugcuaaguguuaggggguuuccgccccuuagugcu
gcagcuaacgcauuaagcacuccgccuggggaguacgaccgcaagguuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacca
cucuggagacagagcuuucccgggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuugauuuuaguugccagcauuuaguugggcacucuaaagugacugcc
ggugcaagccggaggaagguggggaugacgucaaaucaucaugccccuua
ugaccugggcuacacacgugcuacaauggaugguacaaagggucgcgaag
ccgcgagguggagccaaucccauaaaaccauucucaguucggauuguagg
cugcaacucgccuacaugaagccggaaucgcuaguaaucguggaucagca
ugccacggugaauacguucccgggccuuguacacaccgcccgucacacca
cgagaguuuguaacacccgaagucgguaggguaaccggagccagccgccg
aaggugggacagauaauuggggugaagucguaacaagguagccguaucgg
aaggugcggcuggaucaccuccu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<..<<...<...>...>>..>>>>>......<<....
....<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>
>......>>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<
<....>>>>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>
>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<<<<<<<.......<.<<<
<<<<........>>>>>>>.>........>>>>>>...>..<<<<<(((.
..<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..
........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<....
...<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<
<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>
>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>.
..>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>
>>..........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>
...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>..
..>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<..
....<<........>>..........<<<<<<<......<<<<<<.....
<<<<<....>>>>>....<<<>>>..>>>>.>>.<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<
<<<....>>>>>........>>>>.........>>>...>>>>>>>>>..
.>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<
<<....>>>...>>....>>>.....>>>>>>>......<....<<<<<<
<........>>>>>>>....>.....>>>>>>....<<<<<<<.......
..>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.
<<<..<<<<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>.
..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<..
..>>>>>>>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu5 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R6 M10 G11 K13 K14 R19 D24 R26 R29 G31 R32 L43 N62 G63 K65 S67 T69 R71 N72 S75 R76 H84 L88
Binding residue
(residue number reindexed from 1)		R4 M8 G9 K11 K12 R17 D22 R24 R27 G29 R30 L41 N60 G61 K63 S65 T67 R69 N70 S73 R74 H82 L86
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu5, PDBe:8uu5, PDBj:8uu5
PDBsum8uu5
PubMed38407413
UniProtA0A6B0JQE1

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