Structure of PDB 8cd1 Chain p Binding Site BS01

Receptor Information
>8cd1 Chain p (length=78) Species: 208964 (Pseudomonas aeruginosa PAO1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFNPVATGGEVRL
SVDQERATYWLGQGAQPSERVAQLLKDA
Ligand information
>8cd1 Chain a (length=1526) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aacugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgagcggauaaagggagcuugcuccuggauucagcggcg
gacgggugaguaaugccuaggaaucugccugguagugggggauaacgucc
ggaaacgggcgcuaauaccgcauacguccugagggagaaagugggggauc
uucggaccucacgcuaucagaugagccuaggucggauuagcuaguuggug
ggguaaaggccuaccaaggcgacgauccguaacuggucugagaggaugau
cagucacacuggaacugagacacgguccagacuccuacgggaggcagcag
uggggaauauuggacaaugggcgaaagccugauccagccaugccgcgugu
gugaagaaggucuucggauuguaaagcacuuuaaguugggaggaagggca
guaaguuaauaccuugcuguuuugacguuaccaacagaauaagcaccggc
uaacuucgugccagcagccgcgguaauacgaagggugcaagcguuaaucg
gaauuacugggcguaaagcgcgcguaggugguucagcaaguuggauguga
aauccccgggcucaaccugggaacugcauccaaaacuacugagcuagagu
acgguagagggugguggaauuuccuguguagcggugaaaugcguagauau
aggaaggaacaccaguggcgaaggcgaccaccuggacugauacugacacu
gaggugcgaaagcguggggagcaaacaggauuagauacccugguagucca
cgccguaaacgaugucgacuagccguugggauccuugagaucuuaguggc
gcagcuaacgcgauaagucgaccgccuggggaguacggccgcaagguuaa
aacucaaaugaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccuggccuugacaugcugagaacu
uuccagagauggauuggugccuucgggaacucagacacaggugcugcaug
gcugucgucagcucgugucgugagauguuggguuaagucccguaacgagc
gcaacccuuguccuuaguuaccagcaccucgggugggcacucuaaggaga
cugccggugacaaaccggaggaagguggggaugacgucaagucaucaugg
cccuuacggccagggcuacacacgugcuacaauggucgguacaaaggguu
gccaagccgcgagguggagcuaaucccauaaaaccgaucguaguccggau
cgcagucugcaacucgacugcgugaagucggaaucgcuaguaaucgugaa
ucagaaugucacggugaauacguucccgggccuuguacacaccgcccguc
acaccaugggaguggguugcuccagaaguagcuagucuaaccgcaagggg
gacgguuaccacggagugauucaugacuggggugaagucguaacaaggua
gccguaggggaaccugcggcuggauc
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<<....<<<<<<..>>>>>>....>>.>>>>>.
.....<<.......<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<
<....>>>>>>......>>.>.....<<<....>>>....<<<<<<..<<
....>>>>>>>>>>>>>>>>..>>.>>>>>>><<<....<<<..<<<<<<
<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...
>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>
>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<
<<......<<<<<..>>>>>.....>>>>...<.<<<<<......<<<<<
<<<<<.......>>>>>>>>>>........>>>>>....>..<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<..
....<<<<<<.....>>>>>>....>>>>>>>>..>>.>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>
>>>>>.>..........<<....>>.>>>>>>>..>>>>.>>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>>>>>>>>
...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>..
..>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<..
....<<........>>..........<<<<<<<......<<<<<<<..<.
..<<<....>>>...>...<<<..>>>..>>>>>.>>.<<<.<<<..<<<
<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>
.....<<<<.<<<<<<<...<...<<<.....>>>.>....>>>>>>>..
...<<<<<.....>>>>>........>>>>.........>>>...>>>>>
>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<...<<<....>>>...>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.
........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
.<<<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<....>>.>
>>>>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...>.....<
<<<<<<<<....>>>>>>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8cd1 70S-PHIKZ014 PHIKZ phage protein occupied ribosome
Resolution3.0 Å
Binding residue
(original residue number in PDB)		M1 V2 R5 L6 R8 S11 K12 K13 R14 F16 N23 S24 R25 A27 R28 D29 G30 R31 F32 V33 R35 F38 G46 E47 W60 Q63 G64 S68 E69 R70 Q73
Binding residue
(residue number reindexed from 1)		M1 V2 R5 L6 R8 S11 K12 K13 R14 F16 N23 S24 R25 A27 R28 D29 G30 R31 F32 V33 R35 F38 G46 E47 W60 Q63 G64 S68 E69 R70 Q73
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8cd1, PDBe:8cd1, PDBj:8cd1
PDBsum8cd1
PubMed38443577
UniProtQ9HXP9|RS16_PSEAE Small ribosomal subunit protein bS16 (Gene Name=rpsP)

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