Structure of PDB 7bgd Chain p Binding Site BS01

Receptor Information
>7bgd Chain p (length=90) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIK
VDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
Ligand information
>7bgd Chain a (length=1096) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cuggagaguuugauccuggcucaggaugaacgcuggcggcgugccuaaua
caugcaagucgagcgaacggacgagaagcuugcuucucugauguuagcgg
cggacgggugaguaacacguggauaaccuaccuauaagacugggauaacu
ucgggaaaccguagcuaauaccggauaauauuuugaaccgcaugguucaa
aagugaaagacggucuugcugucacuuauagauggauccgcgcugcauua
gcuaguugguaagguaacggcuuaccaaggcaacgaugcauagccgaccu
gagagggugaucggccacacuggaacugagacacgguccagacuccuacg
ggaggcagcaguagggaaucuuccgcaaugggcgaaagccugacggagca
acgccgcgugagugaugaaggucuucggaucguaaaacucuguuauuagg
gaagaacauauguguaaguaacugugcacaucuugacgguaccuaaucag
aaagccacggcuaacuacgugccagcagccgcgguaauacguagguggca
agcguuauccggaauuauugggcguaaagcgcgcguaggcgguuuuuuaa
gucugaugugaaagcccacggcucaaccguggagggucauuggaaacugg
aaaacuugagugcagaagaggaaaguggaauuccauguguagcggugaaa
ugcgcagagauauggaggaacaccaguggcgaaggcgacuuucuggucug
uaacugacgcugaugugcgaaagcguggggaucaaacaggauuagauacc
cugguaguccacgccguaaacgaugagugcuaaguguuaggggguuuccc
gccccuuagugcugcagcuaacgcauuaagcacuccgccuggggaguacg
accgcaagguugaaacucaaaggaauugacggggaccgucuuguacacac
cgcccgucacaccacgagaguuuguaacacccgaagccgguggaguaacc
uuuuaggagcuagccgucgaaggugggacaaaugauuggggugaagucgu
aacaagguagccguaucggaaggugcggcuggaucaccuccuuucu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<.<<<<......................>>>>.>>>>
>......<<........<<<<<<<..<<...<<<<<<<.<<<<.....<<
.<<<....>>>.>>......>>>>......<<<<<<<<<<..>>>>>>>>
>>......<<<<<<...>>>>>>.>>>>>>>..>>>>>>>>>.<<<....
<<<..<<<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<<
....>>>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>
>>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>>
.>>>>>>..<<<<......<<<<....>>>>.....>>>>...<<<<<<<
........<<.<<................>>.>.>......>>>>>>...
>..<<<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>.
.>>>>>>>>>..........<<<((.....<<<<<..<<<.<<<<<<<.<
<<<<<<<<.......<<<<<<.....>>>>>>.....>>>>>>>..>>>>
>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......
>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>>>
>.>>>...>>>..>>>>>....<<<<<<<...<...<<<<.<.....>.>
>>>...>>>>>>>>..........<<<<<<..<<<<<<<<<<<<<.....
>>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<
<<<....>>>>....>>>..)))).]<<<<<.<<<<.>>>>>>>.>>...
.<..<<.<.<<<<.<<<..<<<<<<..<<<<....<.<<<<..<<<..<<
<...>>>.>>>.>>>>.>...>>>>..>>>>>>..>>>.>>>>..>.>>.
..>.....<<<<<<<<<....>>>>>>>>>................
Receptor-Ligand Complex Structure
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PDB7bgd Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus
Resolution3.2 Å
Binding residue
(original residue number in PDB)		A2 K4 R6 L7 R9 G11 K13 R14 F17 Y18 R19 D24 R26 P28 R29 G31 R32 P42 W60 D63 G64 K66 T68 T70 H72 N73 S76 M81 K82 D85 K89
Binding residue
(residue number reindexed from 1)		A1 K3 R5 L6 R8 G10 K12 R13 F16 Y17 R18 D23 R25 P27 R28 G30 R31 P41 W59 D62 G63 K65 T67 T69 H71 N72 S75 M80 K81 D84 K88
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7bgd, PDBe:7bgd, PDBj:7bgd
PDBsum7bgd
PubMed
UniProtQ2FZ45|RS16_STAA8 Small ribosomal subunit protein bS16 (Gene Name=rpsP)

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