Structure of PDB 5zlu Chain p Binding Site BS01

Receptor Information
>5zlu Chain p (length=110) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKV
LESAAANAVNNHDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRT
SHITVILGEK
Ligand information
>5zlu Chain V (length=2875) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagaugguaagggcccacgguggaugccucggcacccgagccgaugaagg
acguggcuaccugcgauaagccagggggagccgguagcgggcguggaucc
cuggauguccgaaugggggaacccggccggcgggaagccggucaccgcgc
uuuugcgcggggggaaccuggggaacugaaacaucucaguacccagagga
gaggaaagagaaaucgacucccugaguagcggcgagcgaaaggggaccag
ccuaaaccguccggcuuguccgggcggggucguggggcccucggacaccg
aauccccagccuagccgaagcuguugggaagcagcgccagagagggugaa
agccccguaggcgaaagguggggggauagguagggugcccgaguaccccg
ugguucguggagccaugggggaaucugggcggaccaccgccuaaggcuaa
guacuccgggugaccgauagcgcaccaguaccgugagggaaaggugaaaa
gaaccccgggaggggagugaaauagagccugaaaccgugggcuuacaagc
agucacggccccgcaagggguuguggcgugccuauugaagcaugagccgg
cgacucacggucgugggcgagcuuaaccguugagcggaggcguagggaaa
ccgaguccgaacagggcgcaaaguccgcggccguggacccgaaaccgggc
gagcuagcccuggccagggugaagcuggggugagacccaguggaggcccg
aaccggugggggaugcaaaccccucggaugagcuggggcuaggagugaaa
agcuaaccgagcccggagauagcugguucuccccgaaaugacuuuagggu
cagccucaggcgcugacuggggccuguagagcacugauagggcuaggggg
cccaccagccuaccaaacccugucaaacuccgaagggucccagguggagc
cugggagugagggcgcgagcgauaacguccgcguccgagcgcgggaacaa
ccgagaccgccagcuaaggcccccaagucugggcuaagugguaaaggaug
uggcgccgcgaagacagccaggagguuggcuuagaagcagccauccuuua
aagagugcguaauagcucacuggucgaguggcgccgcgccgaaaaugaug
cggggcuuaagcccagcgccgaagcugcgggucugggggaugaccccagg
cgguaggggagcguucccgaugccgaugaaggccgacccgcgaggcggcu
ggagguaagggaagugcgaaugccggcaugaguaacgauaaagaggguga
gaaucccucucgccguaagcccaaggguuccuacgcaauggucgucagcg
uaggguuaggcgggaccuaaggugaagccgaaaggcguagccgaagggca
gccgguuaauauuccggcccuucccgcaggugcgauggggggacgcucua
ggcuagggggaccggagccaauggacgagcccggccagaagcgcagggug
ggagguaggcaaauccgccucccaacaagcucugcgugguggggaagccc
guacgggugacaaccccccgaagccagggagccaagaaaagccucuaagc
acaaccugcgggaacccguaccgcaaaccgacacaggugggcgggugcaa
gagcacucaggcgcgcgggagaacccucgccaaggaacucugcaaguugg
ccccguaacuucgggagaaggggugcucccuggggugaugagccccggga
gccgcagugaacaggcucuggcgacuguuuaccaaaaacacagcucucug
cgaacucguaagaggagguauagggagcgacgcuugcccggugccggaag
gucaaggggaggggugcaagccccgaaccgaagccccggugaacggcggc
cguaacuauaacgguccuaagguagcgaaauuccuugucggguaaguucc
gaccugcacgaaaagcguaacgaccggagcgcugucucggcgagggaccc
ggugaaauugaacuggccgugaagaugcggccuacccguggcaggacgaa
aagaccccguggagcuuuacugcagccugguguuggcucuuggucgcgcc
ugcguaggauaggugggagccugugaacccccgccuccggguggggggga
ggcgccggugaaauaccacccuggcgcggcugggggccuaacccucggau
ggggggacagcgcuuggcgggcaguuugacuggggcggucgccuccuaaa
agguaacggaggcgcccaaagguccccucaggcgggacggaaauccgccg
gagagcgcaaggguagaagggggccugacugcgaggccugcaagccgagc
aggggcgaaagccgggccuagugaaccgguggucccguguggaagggcca
ucgaucaacggauaaaaguuaccccggggauaacaggcugaucucccccg
agcguccacagcggcggggagguuuggcaccucgaugucggcucgucgca
uccuggggcugaagaaggucccaaggguugggcuguucgcccauuaaagc
ggcacgcgagcuggguucagaacgucgugagacaguucggucucuauccg
ccacgggcgcaggaggcuugaggggggcucuuccuaguacgagaggaccg
gaagggacgcaccucugguuucccagcugucccuccaggggcauaagcug
gguagccaugugcggaagggauaaccgcugaaagcaucuaagcgggaagc
ccgccccaagaugaggccuccacggcgucaagccggaaggacccgggaag
accacccgguggaugggccggggguguaagcgccgcgaggcguugagccg
accggucccaaucguccgaggucuu
..........<<<<<<<<<<<....<<<..<<<<<<<<<<<<......<<
<<<<.[...((.>>>.....<<<<<<......))...]..........>>
>>>>...>>>....<<<....>>><<<<<<.......>>>>>>.<<<<<.
.....>>>>>.>>....<<<<<.....<......>......>>>>>....
.......<<....>>...<<<<<.....<<.....>>....>>>>>....
.<<...<<<<<<<<.....>>>>>>>>.......<...............
..<<<<<.<<<..<<<....<<<<......>>>>.((......<<<....
.))>>>...>>>....>>>..>>>>>.............>.....<<<<<
<<<<.......>>>>>>>>>.......<<<...((((.>>>...>>....
...>>.>>>>>>.>>...............<<....>>....>>......
...<<<......>>>.............>....>>>>>>>>>>>......
.<<<<<<<<<<<....>>>>>>>>>>>...<.<........>.>.<<<<<
<....<<<<<<<<<<<<<...<....<......>....>...........
......................>>>>>>>>>>>>>..<<.<..<<<<<<<
.....<<<<<<<<<..<<.....<<<<<<......>>>>>>......>>.
..<<<..<<<<........>>>>.>>>....>>>>>>>>>...<<<....
.>>>......>>>>>>...>..>.>>...<.<<<....<<<<<....>>>
>><<<<<<<<<.....<<<<<<<<....<<<...<<<<.<<<........
.................>>.>>>>>..>>.>....>>>>>>>>.....>>
>>>>>.>>..<<<<<<<.<........>.>>>>>>>.....<<<......
>>>...<<<<.<<<...<<<((......<<<<<<...........<<..<
<<..<<<...........<.<.......<<.........>>.........
......<<......>>....>.>......>>>..>>>.>>..........
.)).......>>>>>>.>>>...>>>>>>>.<<<.<.........>.>>>
.....>>.>.>....<<.....<<......<<<<<.<......>.>>>>>
...>>....>>..........>>>>>>.......<<.....<<<<<<...
....>>>>>><<<<....<<<<..<<...<<<<<<...<.......>.>>
>>>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>...
<<<<<........>>>>>)).<<<<<<<<<<.....<<<.....<<<<..
<<<..<<<<..<<<<.......[[......>>>>......<<<...<.<<
<<<<<<.<.......>>>>>>>>.....>.>.>>>..........<.<<.
....>>.>.......>>>>...>>>...>>>>.........>>>......
...>>>>>>>>>>.>>>>..>>.....<<......>>.>>>>.<<<<<..
..>>>>>..>>>>..<<<<....<<<<<<<<.<<.........<.....<
<<<<.....<..>......>>>>><<<<..<..<<.......>>..>.>>
>>............<<<<<<<<<..<<<.........>>>..<<<<<<<.
....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<
<<...<<...<<<<......>>>>...>>...>>>>>>>>..>>>>><<<
<<<.......>>>>>>........<...........<<<<<.......>>
>>>.....>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>
>>>...........<<<<<........>>>>>..<<<<<<<<.<<<....
.....<<<..<.<<<<..<<<<<.<<<.<.<<...<<<<<....<<<<..
...........................<<<<<<<<....>>>>>>>>...
........................>>>>....>>>>>....<<<<<....
>>>>>.....>>.>.>>>..>>>>>....<.......>..<<<<<<....
.......>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.
....<....(((.>....>>>>>>>...<<.<..<<<......>>>..>.
>>.<<<....>>>.>>))).......<<<<<<<.<<..))))..>>>>>>
>>>.............>>>>...>.>>>.......<<<<....<<<<<..
.<<.......>>...>>>>.>....>>>.>.......<.<<<.<<<<<..
.<<<<<<<<<......>>>>>>..>>>.<<<<.......>>>>......>
>>>..>...>>>..>....<<<<<<<....>>>.>>>>........>>>>
>>>>>>>.....<<<<<<...<<<<..<<<<<<<...............>
>>>>>>.<<<<<...<<<<...<<<<<<<<<<..]]..>>>>>...>>>>
>...>>>>.>>>>>...<<<.<..<<<<<...........>>>>>...>>
>>.>>>>.......>>>>>>..................<<<<<<<<<...
....>>>>>....<<<<<<<<.<<<....<<<<<....>>>>>...>>>.
.>>>>>.>>>...>>>>........
Receptor-Ligand Complex Structure
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PDB5zlu Ribosome protection by antibiotic resistance ATP-binding cassette protein.
Resolution3.6 Å
Binding residue
(original residue number in PDB)
I6 R8 R11 S13 K16 R18 R25 K41 R42 S53 N60 N61 R84 P87 A89 R90 G91 K98
Binding residue
(residue number reindexed from 1)
I6 R8 R11 S13 K16 R18 R25 K41 R42 S53 N60 N61 R84 P87 A89 R90 G91 K98
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5zlu, PDBe:5zlu, PDBj:5zlu
PDBsum5zlu
PubMed29712846
UniProtQ5SHP3|RL22_THET8 Large ribosomal subunit protein uL22 (Gene Name=rplV)

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