Structure of PDB 5zeu Chain p Binding Site BS01

Receptor Information
>5zeu Chain p (length=113) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVKIKLTRLGKIRNPQYRIIVADARTRRDGRAIEVIGRYHPKEEPSLIQI
DSERAQYWLGVGAQPTEPVLALLKITGDWQKFKGLPGAEGTLKVKEPKPS
KLDLFNAALAEAE
Ligand information
>5zeu Chain a (length=1506) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucaggacgaacgcuggcggcgugcuuaacac
augcaagucgaacggaaaggcccuuucggggguacucgaguggcgaacgg
gugaguaacacgugggugaucugcccugcacuuugggauaagccugggaa
acugggucuaauaccgaauacacccugcuggucgcauggccugguagggg
aaagcuuuugcggugugggaugggcccgcggccuaucagcuuguuggugg
ggugauggccuaccaaggcgacgacggguagccggccugagagggugacc
ggccacacugggacugagauacggcccagacuccuacgggaggcagcagu
ggggaauauugcacaaugggcgcaagccugaugcagcgacgccgcgugag
ggaugacggccuucggguuguaaaccucuuucagcacagacgaagcgcaa
gugacgguaugugcagaagaaggaccggccaacuacgugccagcagccgc
gguaauacguaggguccgagcguuguccggaauuacugggcguaaagagc
ucguaggugguuugucgcguuguucgugaaaacucacagcuuaacugugg
gcgugcgggcgauacgggcagacuagaguacugcaggggagacuggaauu
ccugguguagcgguggaaugcgcagauaucaggaggaacaccgguggcga
aggcgggucucugggcaguaacugacgcugaggagcgaaagcguggggag
cgaacaggauuagauacccugguaguccacgccguaaacgguggguacua
gguguggguuuccuugggauccgugccguagcuaacgcauuaaguacccc
gccuggggaguacggccgcaaggcuaaaacucaaaggaauugacgggggc
ccgcacaagcggcggagcauguggauuaauucgaugcaacgcgaagaacc
uuaccuggguuugacaugcacaggacgccggcagagaugucgguucccuu
guggccugugugcagguggugcauggcugucgucagcucgugucgugaga
uguuggguuaagucccgcaacgagcgcaacccuugucucauguugccagc
acguuaugguggggacucgugagagacugccggggucaacucggaggaag
guggggaugacgucaagucaucaugccccuuauguccagggcuucacaca
ugcuacaauggccgguacaaagggcugcgaugccgugagguggagcgaau
ccuuucaaagccggucucaguucggaucggggucugcaacucgaccccgu
gaagucggagucgcuaguaaucgcagaucagcaacgcugcggugaauacg
uucccgggccuuguacacaccgcccgucacgucaugaaagucgguaacac
ccgaagccgguggccuaacccuuguggagggagccgucgaaggugggauc
ggcgauugggacgaagucguaacaagguagccguaccggaaggugcggcu
ggauca
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<..<<<<<<<....>>>>>.>>>..>>>>>......
<<........<<<<<<<..<<...<<<<<<<<<<<<.....<<<<<....
..>>>>>......>>>>.....<<<<<<<<<<<<..>>>>>.>>>>>>>.
...<<....>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>
>.........<<<...<<<<<....>>>>.>>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<.<<<<<......<<....
>>.......>>>>>....>..<<<<<(((...<<<<<.....<<.)))>>
.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<
<<...<<<.<<<<<<<.<<<<<<<<<<.....<<<<<<<.....>>>>>>
>...>>>>>>>..>>>>>>>>>>...<<<<<<<<...<<<<<<<....<<
<<<<<<<..<<<......>>>.....>>>>>>>>>...........<<..
..>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<...<
<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<..
<<<<<<<<<<<<...>>>>>>>>>>>>...<<..))>>.....>>>>>>.
>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<
<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>.......
...<<<<<<<......<<<<<<<...<<<<<<<....>>>>>>>.<<...
..>>.>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<....>>
>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<....<<..<
<<......>>>>>.....>>>>>>.....<<<<<.....>>>>>......
..>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>>>>
>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>....
>>>......>>>>>>>......<....<<<<<<<........>>>>>>>.
...>.....>>>>>>....<<<<<<<..........>>>>>>>......>
>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<..<<<
<....<.<<<<..<<<..<<.....>>.>>>.>>>>.>...>>>>..>>>
>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>
......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5zeu Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		K4 K6 L7 R9 L10 G11 K12 I13 R14 Q17 R19 D24 R26 R28 R29 G31 R32 R39 K43 P46 I49 V62 T67 P69 I76 L93 K94 K99
Binding residue
(residue number reindexed from 1)		K3 K5 L6 R8 L9 G10 K11 I12 R13 Q16 R18 D23 R25 R27 R28 G30 R31 R38 K42 P45 I48 V61 T66 P68 I75 L92 K93 K98
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5zeu, PDBe:5zeu, PDBj:5zeu
PDBsum5zeu
PubMed30206241
UniProtA0QV37|RS16_MYCS2 Small ribosomal subunit protein bS16 (Gene Name=rpsP)

[Back to BioLiP]