Structure of PDB 7jil Chain o Binding Site BS01

Receptor Information
>7jil Chain o (length=56) Species: 986 (Flavobacterium johnsoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RIKLKSYDHMLVDKSAEKIVKTIPLPTHKKLFTVLRSPHVNKKAREQFEV
MSYKRL
Ligand information
>7jil Chain 2 (length=1475) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uacgaugaagaguuugauccuggcucaggaugaacgcuagcggcaggcuu
aacacaugcaagucgagggguagagaccggcgcacgggugcguaacgcgu
augcaaucugccuuucacagagggauagcccagagaaauuuggauuaaua
ccucauaguauuauagagcggcaucacuuuauaauuaaagucacaacggu
gaaagaugagcaugcgucccauuagcuaguugguaagguaacggcuuacc
aaggccacgauggguagggguccugagagggagaucccccacacugguac
ugagacacggaccagacuccuacgggaggcagcagugaggaauauugguc
aauggacgcaagucugaaccagccaugccgcgugcaggaugacgguccgg
auuguaaacugcuuuuguacgagaagaaacacuccuauauauaggagcuu
gacgguaucguaagaauaaggaucggcuaacuccgugccagcagccgcgg
uaauacggaggauccaagcguuauccggaaucacuggguuuaaagggucc
guaggcgguuuaguaagucaguggugaaagcccaucgcucaacgguggaa
cggccauugauacugcugaacuugaauuacugggaaguaacuagaauaug
uaguguagcggugaaaugcuuagauauuacauggaauaccaauugcgaag
gcagguuacuaccaguuuauugacgcugauggacgaaagcguggggagcg
aacaggauuagauacccugguaguccacgccguaaacgauggauacuagc
uguugggcgcaaguucaguggcuaagcgaaagugauaaguaucccaccug
gggaguacgaacgcaaguuugaaacucaaaggaauugacgggggcccgca
caagcgguggaacaugugguuuaauucgaugauacgcgaggaaccuuacc
aaggcuuaaaugcagacugcgauuuggaaacagaucucaguuuacaaggu
gcugcaugguugucgucagcucgugccgugaggugucagguuaaguccua
uaacgagcgcaaccccuguuguuaguugccagcgaggaacucuaacaaga
cugccagugcaaacugugaggaagguggggaugucaaaucaucacggccc
uuacgccuugggcuacacacgugcuacaauggccgguacagagagcagcc
acugggugaccaggagcgaaucuauaaagccggucacaguucggaucgga
gucugcaacucgacuccgugaagcuggaaucgcuaguaaucggauaucag
ccaugauccggugaauacguucccgggccuuguacacaccgcccgucaag
ccauggaagcugggggugccugaagucggugaccgcaaggagcugccuag
gguaaaacugguaacuagggcuaagucguaacaagguagccguaccggaa
ggugcggcuggaacaccuccuuucu
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<........>>>>>......<<.......<<<<
<<<<..<<...<<<<<<<.<<<<....<.<<<<......>>>>.>.....
>>>>.....<<<<<<<<<........>>>>>>>>>....<<....>>.>>
>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>
>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<
.........>>>>>>.<<<<....>>>>...>>>>>>.........<<<.
...<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<.<<.>>
.>......>>>>.....<<<<<..........<<<<<....>>>>>....
.......>>>>>.......<<<<<(((...<<<<<.....<<.)))>>..
.....>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<<<
<..<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>>..
..>>>>>>>>..>>>>>>>>>...<<<.<<<<<..<<<<<<<....<<<<
<<<<<..<<<......>>>.....>>>>>>>>>..........<<<....
>>>>>>>>>>.>>>>>..>>>...>>>..>>>>>....<<<<<<...<<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<<<<<
<<<<<<<<....>>>>>>>>>>>>.<<..))>>.....>>>>>>.>>>.<
<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<
<.<<<<<<..<.<<<<<<<<......<<........>>..........<<
<<<<<.....<<.<<<<<<.<<<<<<....>>>>>>.>>>>>>.>><<<.
<<<...<<<<<.......<<<<<<<<<....>>>...<<<......>>>.
..>>>>>>.....<<<..<<<<<<<...<<.....>>....>>>>>>>..
....<<<......>>>..........>>>.......>>>...>>.>>>>>
>...>>>>>>>...>>.>>>>>>.>.....<<<<<<<......<<..<<.
.<<<<....>>>>..>>....>>.....>>>>>>>......<....<<<<
<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.....
.....>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<
<<.<<<..<<<<<...<<<<<..<<.<<<<..<<....>>.>>>>.>>.>
>>>>...>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....
>>>>>>>>>................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7jil Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		K8 H14 I39 P40 L41 P42 T43 H44 R52 S53 P54 H55 V56 N57 K58 R61 Y69 R71
Binding residue
(residue number reindexed from 1)		K3 H9 I23 P24 L25 P26 T27 H28 R36 S37 P38 H39 V40 N41 K42 R45 Y53 R55
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7jil, PDBe:7jil, PDBj:7jil
PDBsum7jil
PubMed33330920
UniProtA0A1J7CP29

[Back to BioLiP]