Structure of PDB 6ylx Chain o Binding Site BS01

Receptor Information
>6ylx Chain o (length=133) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFL
EFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEK
GITKPVKQLKDNMKQKHEERIKKLAKSGIEFKW
Ligand information
>6ylx Chain 6 (length=65) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ccuucucaaacauucuguuugguagugagugauacucuuuggaguuaacu
ugaaauugccuuaaa
......<<<<<<...>>>>>>.....<<<<...<<<<....>>>>..>>>
>..............
Receptor-Ligand Complex Structure
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PDB6ylx Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Resolution3.9 Å
Binding residue
(original residue number in PDB)		Y94 S96 R97 H100 N125 K126 K127 N130 R132 H133 Y134 F136 L157 M158 H160 R165 E174 K175 L176 Y177 Y179 K187 I189 T190 K191 R207
Binding residue
(residue number reindexed from 1)		Y7 S9 R10 H13 N38 K39 K40 N43 R45 H46 Y47 F49 L70 M71 H73 R78 E87 K88 L89 Y90 Y92 K100 I102 T103 K104 R120
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0019843 rRNA binding
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0030687 preribosome, large subunit precursor
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ylx, PDBe:6ylx, PDBj:6ylx
PDBsum6ylx
PubMed32668200
UniProtP53927|NOP15_YEAST Ribosome biogenesis protein 15 (Gene Name=NOP15)

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