Structure of PDB 6qdw Chain o Binding Site BS01

Receptor Information

>6qdw Chain o (length=116) Species: 469008 (Escherichia coli BL21(DE3))

DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF

Ligand information

>6qdw Chain a (length=118)

gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggca

<<..<..<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>.>...>>.

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6qdw Cysteine oxidation and disulfide formation in the ribosomal exit tunnel.
• Resolution: 2.83 Å
• Binding residue (original residue number in PDB): K3 R15 R25 H29 R30 T31 P32 R33 H34 Y36 Q38 G44 E46 V54 K63 Y64 N67 K68 Q98 H100 G101 R102
• Binding residue (residue number reindexed from 1): K2 R14 R24 H28 R29 T30 P31 R32 H33 Y35 Q37 G43 E45 V53 K62 Y63 N66 K67 Q97 H99 G100 R101

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008097 5S rRNA binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6qdw, PDBe:6qdw, PDBj:6qdw
• PDBsum: 6qdw
• PubMed: 33149120
• UniProt: P0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)