Structure of PDB 8uu9 Chain n Binding Site BS01

Receptor Information
>8uu9 Chain n (length=60) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICFRELAYKG
QIPGVKKASW
Ligand information
>8uu9 Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauac
augcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgug
ggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaauac
cgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggcu
aucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaugg
ccuaccaaggcaacgaugcauagccgaccugagagggugaucggccacac
ugggacugagacacggcccagacuccuacgggaggcagcaguagggaauc
uuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaag
guuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagua
acugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacgu
gccagcagccgcgguaauacguagguggcaagcguuguccggauuuauug
ggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagcccccg
gcuuaaccggggagggucauuggaaacuggaagacuggagugcagaagag
gagaguggaauuccacguguagcggugaaaugcguagauauguggaggaa
caccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcga
aagcguggggagcaaacaggauuagauacccugguaguccacgccguaaa
cgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcuaa
cgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaaa
ggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucgaa
gcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucuggag
acagagcuuucccgggacaaagugacagguggugcaugguugucgucagc
ucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuugau
uuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaag
ccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccugg
gcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgagg
uggagccaaucccauaaaaccauucucaguucggauuguaggcugcaacu
cgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacgg
ugaauacguucccgggccuuguacacaccgcccgucacaccacgagaguu
uguaacacccgaagucgguaggguaaccggagccagccgccgaagguggg
acagauaauuggggugaagucguaacaagguagccguaucggaaggugcg
gcuggaucaccuccu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<<......>>.>>>>>......<<........<<<<
<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......>
>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>>
>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<.......
>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>.......
..<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<
<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<....
....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<.
....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........
<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<<
<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...<
<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>...
........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>..
..<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>......
....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..)
)>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)
))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<..
......>>..........<<<<<<<......<<<<<<<....<<<<<...
.>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<<......<<
<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<
<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....>
>>>>........>>>>.......>.>>>...>>>>>>>>>...>>>>>>>
...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>>
>...>>....>>>.....>>>>>>>......<....<<<<<<<.......
.>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>>
>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<
<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>..
>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>
>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu9 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		A2 K3 K4 S5 M6 K9 Y16 V18 Q19 Y21 C27 R29 H31 S32 I34 R35 I42 R45 S60 W61
Binding residue
(residue number reindexed from 1)		A1 K2 K3 S4 M5 K8 Y15 V17 Q18 Y20 C26 R28 H30 S31 I33 R34 I41 R44 S59 W60
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8uu9, PDBe:8uu9, PDBj:8uu9
PDBsum8uu9
PubMed38407413
UniProtA0A0U5AGZ1

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