Structure of PDB 8p09 Chain n Binding Site BS01

Receptor Information
>8p09 Chain n (length=75) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQE
LLSKGLIKLVSKHRAQVIYTRNTKG
Ligand information
>8p09 Chain 2 (length=1741) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacgcacggccgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgcuacuuggauaacugugguaauuc
uagagcuaauacaugccgacggcgcugacucccuuugugugggaugcgug
cauuuaucagaucaaaaccaacccggucgcggcuuuggugacucuagaua
accucgggccgaucgcagcccuccguggcggcgacgacccauucgaacgu
cugcccuaucaacuuucgaugguagucgccgugccuaccauggugaccac
gggugacggggaaucaggguucgauuccggagagggagccugagaaacgg
cuaccacauccaaggaaggcagcaggcgcgcaaauuacccacucccgacc
cggggagguagugacgaaaaauaacaauacaggacucuuucgaggcccug
uaauuggaaugaguccacuuuaaauccuuuaacgaggauccauuggaggg
caagucuggucgcagcagccgcgguaauuccagcuccaauagcguauauu
aaaguugcugcaguuaaaaagcucguaguuggaucuuguggaggguuccc
cgccccuugccucucggcgccggcccgaagcguuuacuuugaaaaaauua
gaguguucaaagcaggcccgagccgccuggauaccgcagcuaggaauaau
ggaauaggaccgcgguucuauuuuguugguuuucggaacugaggccauga
uuaagagggacggccgggggcauucguauugcgccgcuagaggugaaauu
cuuggaccggcgcaagacggaccagagcgaaagcauuugccaagaauguu
uucauuaaucaagaacgaaagucggagguucgaagacgaucagauaccgu
cguaguuccgaccauaaacgaugccgacuggcgaugcggcggcguuauuc
ccaugacccgccgggcagcuuccgggaaaccaaagucuuuggguuccggg
gggaguaugguugcaaagcugaaacuuaaaggaauugacggaagggcacc
accaggaguggagccugcggcuuaauuugacucaacacgggaaaccucac
ccggcccggacacggacaggauugacagauugauagcucuuucucgauuc
ugugggugguggugcauggccguucuuaguugguggagcgauuugucugg
uuaauuccgauaacgaacgagacucuggcaugcuaacuaguuacgcgacc
cccgagcggucggcgucccccaacuucuuagagggacaaguggcguucag
ccacccgagauugagcaauaacaggucugugaugcccuuagaugucgggg
cugcacgcgcgcuacacugacuggcucagcgugugccuacccuacgccgg
caggcgcggguaacccguugaaccccauucgugauggggaucggggauug
caauuauuccccaugaacgaggaauucccaguaagugcgggucauaagcu
ugcguugauuaagucccugcccuuuguacacaccgcccgucgcuacuacc
gauuggaugguuuagugaggcccucggaucggcccgccggggucccuggc
ggagcgcugagaagacggucgaacuugacuaucuagaggaaguaaaaguc
guaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<...[[[[>>>>>[[[.((((((.....{{.........[[[.
[[[..<<....<<....<<..........>>...>>.>>......{{...
.....[[[......{{....[[[........<<.....<<.<<<.....>
>>.>>......>>.........<<<...<<.<......>.>>...>>>.[
[..(((((.....<<<<<<<<<<<<....>>>....<......>..))))
)......]]...<<<<.<<<......>>>.>>>>....]]]...}}....
]]].<<<....<<<....<<<<<<<.........>>>>>>>>>>......
>>>...<<<.<<<<....>>>>....>>>.}}.<<.<<<..........>
>>.>>.<.<<....>>.>...]]]]]].........<<<....<<<<...
>>>>..>>>......}}.......<<<<<<.<<.<<<....>>>.>>..>
>>.>>>......<<..<...........>..>>.........<<<<<((.
...<.<<<<.....<<..))>>.......>>>>>>>>>>..)))))).]]
]............{{.......{{...[[[.[[....<<<<.<<<.>>>>
>>>.....<<.<......<<..>>....>>>..<<<<<<.<.......<<
...<.......>.<<<<.......>>>>...>>......>.>>>..>>>.
......[[....(((((((.....>>>>>>>>>.)))))))...]]....
]]....<<<<<<..<...<<<<..<<..<<<<<<<<...<<<......>>
>......>>>>>>>>..>>.......<<....>>...>>>>..>..>>>.
>>>...]]]...}}......<<<<<<<...<...<<<<.<.....>.>>>
>...>>>>>>>>..........<<<.<<.<<<..<.<<<<<<.<<<<<..
..>>>>>>>>>>>.>..>>>...<<..}}>>...>>.....>>>.....<
<<......<<<<....>>>>....>>>..]]]]..<<<<<.<<<<<<<..
<<..<<<<<..<<<.<<<<<<......<<........>>..........<
<<<<......<<<<<<.......<<.<<<........>>>.>>.....>>
>>>>...<<.<<<..<<.<<<<<<....<<<.<<<<......>>...<<<
......>>>...>>.>>>....<<<...<...<<<<..<<<<....<..<
..<<......>>>...>....>>>>..>>>>..>.....<<<<<.....>
>>>>........>>>....>>>.>>>.....>>>>>>>......>>>>>.
..>>.>>>>.>>>.....<<.<<<........<.......<<<.<<<<..
..>>>>.>>>....>.........>>>.>>......<.....<<<<<...
.......>>>>>.....>.....>>>>>.....<<<<<<<<.......>>
>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<
....<<<<<<<<.<<<..<<<<.<<...<<<<<.<<<<<<<<.>>>>>>>
>....>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>...>.>
>...>.....<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p09 N 6 -methyladenosine in 5' UTR does not promote translation initiation.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		D42 K43 L44 N46 R80 S82 R85 H103 R104
Binding residue
(residue number reindexed from 1)		D2 K3 L4 N6 R40 S42 R45 H63 R64
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006364 rRNA processing
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0014069 postsynaptic density
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p09, PDBe:8p09, PDBj:8p09
PDBsum8p09
PubMed38244546
UniProtG1TDB3|RS25_RABIT Small ribosomal subunit protein eS25 (Gene Name=RPS25)

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