Structure of PDB 6o8w Chain n Binding Site BS01

Receptor Information
>6o8w Chain n (length=60) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKG
QIPGVKKASW
Ligand information
>6o8w Chain a (length=1523) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuggaaagaggaguggcggacgggugaguaaca
cguggguaaccuacccaucagagggggauaacacuuggaaacaggugcua
auaccgcauaacaguuuaugccgcauggcauaagagugaaaggcgcuuuc
gggugucgcugauggauggacccgcggugcauuagcuaguuggugaggua
acggcucaccaaggccacgaugcauagccgaccugagagggugaucggcc
acacugggacugagacacggcccagacuccuacgggaggcagcaguaggg
aaucuucggcaauggacgaaagucugaccgagcaacgccgcgugagugaa
gaagguuuucggaucguaaaacucuguuguuagagaagaacaaggacguu
aguaacugaacguccccugacgguaucuaaccagaaagccacggcuaacu
acgugccagcagccgcgguaauacguagguggcaagcguuguccggauuu
auugggcguaaagcgagcgcaggcgguuucuuaagucugaugugaaagcc
cccggcucaaccggggagggucauuggaaacugggagacuugagugcaga
agaggagaguggaauuccauguguagcggugaaaugcguagauauaugga
ggaacaccaguggcgaaggcggcucucuggucuguaacugacgcugaggc
ucgaaagcguggggagcaaacaggauuagauacccugguaguccacgccg
uaaacgaugagugcuaaguguuggaggguuuccgcccuucagugcugcag
caaacgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacu
caaaggaauugacgggggcccgcacaagcgguggagcaugugguuuaauu
cgaagcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucu
agagauagagcuuucccuucggggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuuauuguuaguugccaucauuuaguugggcacucuagcgagacugcc
ggugacaaaccggaggaagguggggaugacgucaaaucaucaugccccuu
augaccugggcuacacacgugcuacaaugggaaguacaacgagucgcuag
accgcgaggucaugcaaaucucuuaaagcuucucucaguucggauugcag
gcugcaacucgccugcaugaagccggaaucgcuaguaaucgcggaucagc
acgccgcggugaauacguucccgggccuuguacacaccgcccgucacacc
acgagaguuuguaacacccgaagucggugagguaaccuuuuuggagccag
ccgccuaaggugggauagaugauuggggugaagucguaacaagguagccg
uaucggaaggugcggcuggauca
...<<<<....((((.>>>>.<<<..........<.<<<<<.....<<<.
<<<..<<<..<<.<<<<<.....>>>>>.>>>>>......<<........
<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>>>...
...>>.>.....<.<<<<<<<<....>>>>>>>>..>....<<<<<....
..>>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<........>>...>>>>.
>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>...
....<.<<<....<<<<....>>>>..>>>>.>>.>>>.>...<<<<...
...<<<<....>>>>.....>>>>...<<<<<<<.........<<.<<..
..........>>..>>.........>>>>>>...>..<<<<<(((...<<
<<<.....<..))).>.......>>>>>>>>>>........>>>......
....<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<
<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<
...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>
>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>
>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..
........<<<<<<..<<<<<<<<<<<<......>>>>>>>>>>>>...<
<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>
>..))))..<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......
<<........>>..........<<<<<<<.......<<<<<.....<<<<
<....>>>>>................>>>>.>..<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<...<.....>..>>>...>>>>>>>.....<<
<<<.....>>>>>........>>>>.........>>>...>>>>>>>>>.
..>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<
<<<....>>>>..>>....>>>.....>>>>>>>......<....<<<<<
<<........>>>>>>>....>.....>>>>>>....<<<<<<<......
...>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<
.<<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.>>>.>
>>>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<
<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6o8w Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.53 Å
Binding residue
(original residue number in PDB)		A2 K3 K4 S5 M6 K9 R12 K15 H16 S17 T18 Q19 T22 C27 R29 H31 S32 Y34 R35 R41 I42 S60 W61
Binding residue
(residue number reindexed from 1)		A1 K2 K3 S4 M5 K8 R11 K14 H15 S16 T17 Q18 T21 C26 R28 H30 S31 Y33 R34 R40 I41 S59 W60
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o8w, PDBe:6o8w, PDBj:6o8w
PDBsum6o8w
PubMed33004869
UniProtA0A1B4XKT0

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