Structure of PDB 8uu9 Chain m Binding Site BS01

Receptor Information
>8uu9 Chain m (length=114) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTRTRDLTEEEL
GKIREILDRIKVEGDLRREVNLNIKRLIEIGSYRGMRHRRGLPVRGQNTK
NNARTRKGPSKTVA
Ligand information
>8uu9 Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauac
augcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgug
ggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaauac
cgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggcu
aucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaugg
ccuaccaaggcaacgaugcauagccgaccugagagggugaucggccacac
ugggacugagacacggcccagacuccuacgggaggcagcaguagggaauc
uuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaag
guuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagua
acugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacgu
gccagcagccgcgguaauacguagguggcaagcguuguccggauuuauug
ggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagcccccg
gcuuaaccggggagggucauuggaaacuggaagacuggagugcagaagag
gagaguggaauuccacguguagcggugaaaugcguagauauguggaggaa
caccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcga
aagcguggggagcaaacaggauuagauacccugguaguccacgccguaaa
cgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcuaa
cgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaaa
ggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucgaa
gcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucuggag
acagagcuuucccgggacaaagugacagguggugcaugguugucgucagc
ucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuugau
uuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaag
ccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccugg
gcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgagg
uggagccaaucccauaaaaccauucucaguucggauuguaggcugcaacu
cgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacgg
ugaauacguucccgggccuuguacacaccgcccgucacaccacgagaguu
uguaacacccgaagucgguaggguaaccggagccagccgccgaagguggg
acagauaauuggggugaagucguaacaagguagccguaucggaaggugcg
gcuggaucaccuccu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<<......>>.>>>>>......<<........<<<<
<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......>
>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>>
>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<.......
>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>.......
..<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<
<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<....
....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<.
....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........
<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<<
<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...<
<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>...
........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>..
..<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>......
....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..)
)>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)
))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<..
......>>..........<<<<<<<......<<<<<<<....<<<<<...
.>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<<......<<
<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<
<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....>
>>>>........>>>>.......>.>>>...>>>>>>>>>...>>>>>>>
...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>>
>...>>....>>>.....>>>>>>>......<....<<<<<<<.......
.>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>>
>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<
<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>..
>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>
>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu9 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		G24 G26 R87 R90 H91 L95 P96 V97 G99 T102 K103 N105 A106 R107 T108 K114
Binding residue
(residue number reindexed from 1)		G21 G23 R84 R87 H88 L92 P93 V94 G96 T99 K100 N102 A103 R104 T105 K111
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu9, PDBe:8uu9, PDBj:8uu9
PDBsum8uu9
PubMed38407413
UniProtA0A0U5ARJ0

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