Structure of PDB 8bh7 Chain m Binding Site BS01

Receptor Information
>8bh7 Chain m (length=119) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDD
ELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQK
TKNNARTRKGPVKTVANKK
Ligand information
>8bh7 Chain a (length=1541) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggagaguuugauccuggcucaggaugaacgcuggcggcgugccuaauaca
ugcaagucgagcgaacggacgagaagcuugcuucucugauguuagcggcg
gacgggugaguaacacguggauaaccuaccuauaagacugggauaacuuc
gggaaaccguagcuaauaccggauaauauuuugaaccgcaugguucaaaa
gugaaagacggucuugcugucacuuauagauggauccgcgcugcauuagc
uaguugguaagguaacggcuuaccaaggcaacgaugcauagccgaccuga
gagggugaucggccacacuggaacugagacacgguccagacuccuacggg
aggcagcaguagggaaucuuccgcaaugggcgaaagccugacggagcaac
gccgcgugagugaugaaggucuucggaucguaaaacucuguuauuaggga
agaacauauguguaaguaacugugcacaucuugacgguaccuaaucagaa
agccacggcuaacuacgugccagcagccgcgguaauacguagguggcaag
cguuauccggaauuauugggcguaaagcgcgcguaggcgguuuuuuaagu
cugaugugaaagcccacggcucaaccguggagggucauuggaaacuggaa
aacuugagugcagaagaggaaaguggaauuccauguguagcggugaaaug
cgcagagauauggaggaacaccaguggcgaaggcgacuuucuggucugua
acugacgcugaugugcgaaagcguggggaucaaacaggauuagauacccu
gguaguccacgccguaaacgaugagugcuaaguguuaggggguuucccgc
cccuuagugcugcagcuaacgcauuaagcacuccgccuggggaguacgac
cgcaagguugaaacucaaaggaauugacggggacccgcacaagcggugga
gcaugugguuuaauucgaagcaacgcgaagaaccuuaccaaaucuugaca
uccuuugacaacucuagagauagagccuuccccuucgggggacaaaguga
cagguggugcaugguugucgucagcucgugucgugagauguuggguuaag
ucccgcaacgagcgcaacccuuaagcuuaguugccaucauuaaguugggc
acucuaaguugacugccggugacaaaccggaggaagguggggaugacguc
aaaucaucaugccccuuaugauuugggcuacacacgugcuacaauggaca
auacaaagggcagcgaaaccgcgaggucaagcaaaucccauaaaguuguu
cucaguucggauuguagucugcaacucgacuacaugaagcuggaaucgcu
aguaaucguagaucagcaugcuacggugaauacguucccgggucuuguac
acaccgcccgucacaccacgagaguuuguaacacccgaagccgguggagu
aaccuuuuaggagcuagccgucgaaggugggacaaaugauuggggugaag
ucguaacaagguagccguaucggaaggugcggcuggaucac
...<<<<....((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<....<..<.....<<.......>>........>.>...>>>.
.....<<........<<<<<<<..<<...<<<<<<<.<<<<.....<<.<
<<....>>>.>>......>>>>......<<<<<<<<<....>>>>>>>>>
......<<<<.......>>>>.>>>>>>>..>>>>>>>>>.<<<....<<
...<<<<<<<<.......>>>>>>>>.>>......>>>..<<<<<<<<..
..>>>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>
>>...>>>>>>.........<<<.....<<......>>...>>>..>>.>
>>>>>..<<<<........<<....>>.......>>>>....<<<<<<..
..........<..............>.............>>>>>>.....
.<<<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>
>>>>>>>>..........<<<.......<<<<<..<...<<<<<<<.<<<
<.<<<<.......<<<<<<.....>>>>>>.....>>>>.>>..>>>>>>
>>>....<..<<<<...<<<<<<<....<<<<<<<<...<<........>
>......>>>>>>>>...........<<....>>.>>>>>>>..>>>>..
.>......>..>>>>>....<<<<<<<...<...<<<...........>>
>...>>>>>>>>..........<<<<<<..<<.<<<<<<<<<.......>
>>>>>>>>.>>...<<....>>.....>>>>>>.>>>.<<<.......<<
<....>>>.....>>>..))))...<.....<<<<<<....<<<<....<
<<<<<<<<.......<<........>>..........<<<<<<<......
<.<<.......<<<<<....>>>>>....................>>.>.
..<...<....<<<<<.......<<<<<<............<<<<.....
.>>>>..>>>>>>.....<<<..<<<<<<...<<<..<........>>>.
.>>..>>>>>.....<<<<.......>>>>.........>>>........
.>>>...>>..>.>.....>>>>>>>....>.>>>>>>>>.....<<..<
.......<<<..<<...<<<....>>>...>>....>>>.......>..>
>............<<<<<<........>>>>>>.............>>>>
.....<<<<<<.........>>>>>>............>>>>>>......
.........<.....<..<<.....<.<<...<<<......<<<<..<<<
..<<<...>>>.>>>.>>>>.....>>>...>>>......>>..>.....
>............<<<<<<<<....>>>>>>>>....>...
Receptor-Ligand Complex Structure
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PDB8bh7 Ribosome maturation factor P (RimP) from Staphylococcus aureus
Resolution4.23 Å
Binding residue
(original residue number in PDB)
K13 R14 I17 T20 Y21 I22 Y23 G24 I25 G26 T27 S28 T29 Q31 K32 D42 R44 D68 L69 E72 T73 N76 R79 Y86 R90 H91 R93 G94 L95 P96 V97 R98 Q100 K101 K103 N104 N105 A106 R107 T108 R109 K110 G111 P112 K114 T115 V116 A117 N118 K119 K120
Binding residue
(residue number reindexed from 1)
K12 R13 I16 T19 Y20 I21 Y22 G23 I24 G25 T26 S27 T28 Q30 K31 D41 R43 D67 L68 E71 T72 N75 R78 Y85 R89 H90 R92 G93 L94 P95 V96 R97 Q99 K100 K102 N103 N104 A105 R106 T107 R108 K109 G110 P111 K113 T114 V115 A116 N117 K118 K119
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8bh7, PDBe:8bh7, PDBj:8bh7
PDBsum8bh7
PubMed
UniProtQ2FW30|RS13_STAA8 Small ribosomal subunit protein uS13 (Gene Name=rpsM)

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