Structure of PDB 7jil Chain m Binding Site BS01

Receptor Information
>7jil Chain m (length=131) Species: 986 (Flavobacterium johnsoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YTDPIADYLTRVRNAVAANHKVVEIPASNLKKEITKILFDQGYILSYKFE
QNTVQGSIKIALKYDKDTKEPVIKDIQRISKPGLRKYAGAAKLPRILNGL
GIAIVSTSKGLMTGKQAKQLNVGGEVICYVY
Ligand information
>7jil Chain 2 (length=1475) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uacgaugaagaguuugauccuggcucaggaugaacgcuagcggcaggcuu
aacacaugcaagucgagggguagagaccggcgcacgggugcguaacgcgu
augcaaucugccuuucacagagggauagcccagagaaauuuggauuaaua
ccucauaguauuauagagcggcaucacuuuauaauuaaagucacaacggu
gaaagaugagcaugcgucccauuagcuaguugguaagguaacggcuuacc
aaggccacgauggguagggguccugagagggagaucccccacacugguac
ugagacacggaccagacuccuacgggaggcagcagugaggaauauugguc
aauggacgcaagucugaaccagccaugccgcgugcaggaugacgguccgg
auuguaaacugcuuuuguacgagaagaaacacuccuauauauaggagcuu
gacgguaucguaagaauaaggaucggcuaacuccgugccagcagccgcgg
uaauacggaggauccaagcguuauccggaaucacuggguuuaaagggucc
guaggcgguuuaguaagucaguggugaaagcccaucgcucaacgguggaa
cggccauugauacugcugaacuugaauuacugggaaguaacuagaauaug
uaguguagcggugaaaugcuuagauauuacauggaauaccaauugcgaag
gcagguuacuaccaguuuauugacgcugauggacgaaagcguggggagcg
aacaggauuagauacccugguaguccacgccguaaacgauggauacuagc
uguugggcgcaaguucaguggcuaagcgaaagugauaaguaucccaccug
gggaguacgaacgcaaguuugaaacucaaaggaauugacgggggcccgca
caagcgguggaacaugugguuuaauucgaugauacgcgaggaaccuuacc
aaggcuuaaaugcagacugcgauuuggaaacagaucucaguuuacaaggu
gcugcaugguugucgucagcucgugccgugaggugucagguuaaguccua
uaacgagcgcaaccccuguuguuaguugccagcgaggaacucuaacaaga
cugccagugcaaacugugaggaagguggggaugucaaaucaucacggccc
uuacgccuugggcuacacacgugcuacaauggccgguacagagagcagcc
acugggugaccaggagcgaaucuauaaagccggucacaguucggaucgga
gucugcaacucgacuccgugaagcuggaaucgcuaguaaucggauaucag
ccaugauccggugaauacguucccgggccuuguacacaccgcccgucaag
ccauggaagcugggggugccugaagucggugaccgcaaggagcugccuag
gguaaaacugguaacuagggcuaagucguaacaagguagccguaccggaa
ggugcggcuggaacaccuccuuucu
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<........>>>>>......<<.......<<<<
<<<<..<<...<<<<<<<.<<<<....<.<<<<......>>>>.>.....
>>>>.....<<<<<<<<<........>>>>>>>>>....<<....>>.>>
>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>
>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<
.........>>>>>>.<<<<....>>>>...>>>>>>.........<<<.
...<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<.<<.>>
.>......>>>>.....<<<<<..........<<<<<....>>>>>....
.......>>>>>.......<<<<<(((...<<<<<.....<<.)))>>..
.....>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<<<
<..<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>>..
..>>>>>>>>..>>>>>>>>>...<<<.<<<<<..<<<<<<<....<<<<
<<<<<..<<<......>>>.....>>>>>>>>>..........<<<....
>>>>>>>>>>.>>>>>..>>>...>>>..>>>>>....<<<<<<...<<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<<<<<
<<<<<<<<....>>>>>>>>>>>>.<<..))>>.....>>>>>>.>>>.<
<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<
<.<<<<<<..<.<<<<<<<<......<<........>>..........<<
<<<<<.....<<.<<<<<<.<<<<<<....>>>>>>.>>>>>>.>><<<.
<<<...<<<<<.......<<<<<<<<<....>>>...<<<......>>>.
..>>>>>>.....<<<..<<<<<<<...<<.....>>....>>>>>>>..
....<<<......>>>..........>>>.......>>>...>>.>>>>>
>...>>>>>>>...>>.>>>>>>.>.....<<<<<<<......<<..<<.
.<<<<....>>>>..>>....>>.....>>>>>>>......<....<<<<
<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.....
.....>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<
<<.<<<..<<<<<...<<<<<..<<.<<<<..<<....>>.>>>>.>>.>
>>>>...>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....
>>>>>>>>>................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7jil Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		Y2 T3 P5 D8 T11 R12 R14 N15 H21 S29 N30 Q78 P83 G84 R86 Y88 G90 R96 S107 T108 S109 N122 G124
Binding residue
(residue number reindexed from 1)		Y1 T2 P4 D7 T10 R11 R13 N14 H20 S28 N29 Q77 P82 G83 R85 Y87 G89 R95 S106 T107 S108 N121 G123
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7jil, PDBe:7jil, PDBj:7jil
PDBsum7jil
PubMed33330920
UniProtA0A1M5L889

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