Structure of PDB 7bge Chain m Binding Site BS01

Receptor Information
>7bge Chain m (length=72) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RVVISLTYIYGIGTSTAQREVVDGYKVEGDLRRETNLNIKRLMYRGIRHR
RGLPVRGQKTKNNARTRKGPVK
Ligand information
>7bge Chain a (length=465) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggacccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaag
aaccuuaccaaaucuugacauccuuugacaacucuagagauagagccuuc
cccuucgggggacaaagugacagguggugcaugguugucgucagcucgug
ucgugagauguuggguuaagucccgcaacgagcgcaacccuuaagcuuag
uugccaucauuaaguugggcacucuaaguugacugccggugacaaaccgg
aggaagguggggaugacgucaaaucaucaugccccuuaugauuugggcua
cacacgugcuacaauggacaauacaaagggcagcgaaaccgcgaggucaa
gcaaaucccauaaaguuguucucaguucggauuguagucugcaacucgac
uacaugaagcuggaaucgcuaguaaucguagaucagcaugcuacggugaa
uacguucccgggucu
<<<<.<..<<.<<<<<<..<<<<<<<<<<......<<........>>...
.......<<<<<<<......<<<<<......<<<<<....>>>>>.....
<<<....>>>...>>.>.>>.<<<.<<<..<<<<<<.......<<<<<<<
<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<
..<<..<<<......>>>>>...>>>>>>>.....<<<<<.....>>>>>
........>>>>.........>>>...>>>>>>>>>...>>>>>>>...>
>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<......>>...
>>....>>>.....>>>>>>>......<....<<<<<<<........>>>
>>>>....>.....>>>>>>....<<<<<<<.........>>>>>>>...
...>>.....>>>>>
Receptor-Ligand Complex Structure
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PDB7bge Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus
Resolution3.6 Å
Binding residue
(original residue number in PDB)		I17 Y21 Y23 G24 G26 S28 N76 R90 H91 R93 G94 L95 P96 R98 G99 Q100 K101 T102 K103 N104 N105 A106 R107 T108 R109 K110 K114
Binding residue
(residue number reindexed from 1)		I4 Y8 Y10 G11 G13 S15 N38 R48 H49 R51 G52 L53 P54 R56 G57 Q58 K59 T60 K61 N62 N63 A64 R65 T66 R67 K68 K72
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7bge, PDBe:7bge, PDBj:7bge
PDBsum7bge
PubMed
UniProtQ2FW30|RS13_STAA8 Small ribosomal subunit protein uS13 (Gene Name=rpsM)

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