Structure of PDB 6ypu Chain m Binding Site BS01

Receptor Information
>6ypu Chain m (length=122) Species: 575584 (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTTPKKPNSAMRK
VCRVRLTSGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGS
LDCAGVKDRNQSRSKYGAKRPK
Ligand information
>6ypu Chain 2 (length=894) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaacugaagaguuugaucauggcucagauugaacgcuggcggcaggcuua
acacaugcaagucgagcgggggaagcggaccuagcggcggacgggugagu
aaugcuuaggaaucugccuauuagugggggacaacaucucgaaagggaug
cuaauaccgcauacguccuacgggagaaagcagggccuugcgcuaauaga
ugagccuaagucggauuagcuaguuggugggguaaaggccuaccaaggcg
acgaucuguagcgggucugagaggaugauccgccacacugggacugagac
acggcccagacuccuacgggaggcagcaguggggaauauuggacaauggg
gggaacccugauccagccaugccgcgugugugaagaaggccuuaugguug
uaaagcacuuuaagcgaggaggaggcuacuuuaguuaauaccuagagaua
guggacguuacucgcagaauaagcaccggcuaacucugugccagcagccg
cgguaauacagagggugcgagcguuaaucggauuuacugggcguaaagcg
ugcguaggcggcuuauuaagucggaugugaaauccccgagcuuaacuugg
gaauugcauucgauacuggugagcuagaguaugggagaggaugguagaau
uccagguguagcggugaaaugcguagagaucuggaggaauaccgauggcg
aaggcagccaucuggccuaauacugacgcugagguacgaaagcaugggga
gcaaacaggauuagauacccugguaguccaugccguaaacgaugucuacu
agccguuggggccggcuuuaguggcgcagcuaacgcgauaaguagaccgc
cuggggaguacggucgcaagacuaaaacucaaaugaauugacgg
........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<....
.<<<.<<<..<<<..<<.<<<........>>>.>>>>>......<<....
...<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<......>>>>>
......>>.>.....<<<....>>>....<<<<<..>>>>>>>>>>>>>.
.>>.>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>.
.....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<......
...>>>>>>.<<<<....>>>>...>>>>>>.........<<<...<<<<
<....>>>>.>>>>..>>.>>>>>>..<<<<......<<<<....>>>>.
....>>>>.....<<<<<......<<<<<<<<<<.......>>>>>>.>>
>>........>>>>>.......<<<<<(((...<<<<<.....<<.)))>
>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<
<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>
>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....<
<<<<<<<...<<<......>>>......>>>>>>>>...........<<.
...>>.>>>>>>>..>>>.>>>>>...>>>...>>>>....<<<<<<...
<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<.
.<<<<<<<<<<<<>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>
>.<<<......<<<<....>>>>....>>>..)))).]......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ypu Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		A2 N5 Q6 R9 R12 T13 K18 C27 P28 Q29 R31 N46 S47 A48 R50 T58 G68 G69 E70 R83 G84 K88 R110 N111 Q112 S113 R114 S115 K116 R121
Binding residue
(residue number reindexed from 1)		A1 N4 Q5 R8 R11 T12 K17 C26 P27 Q28 R30 N45 S46 A47 R49 T57 G67 G68 E69 R82 G83 K87 R109 N110 Q111 S112 R113 S114 K115 R120
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ypu, PDBe:6ypu, PDBj:6ypu
PDBsum6ypu
PubMed32857965
UniProtD0C9P6

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