Structure of PDB 6o90 Chain m Binding Site BS01

Receptor Information
>6o90 Chain m (length=112) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNE
QTDAIRAEIDKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQN
TKNNARTRKGPT
Ligand information
>6o90 Chain a (length=1528) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuuccuuggaaagaggaguggcggacgggugag
uaacacguggguaaccuacccaucagagggggauaacacuuggaaacagg
ugcuaauaccgcauaacaguuuaugccgcauggcauaagagugaaaggcg
cuuucgggugucgcugauggauggacccgcggugcauuagcuaguuggug
agguaacggcucaccaaggccacgaugcauagccgaccugagagggugau
cggccacacugggacugagacacggcccagacuccuacgggaggcagcag
uagggaaucuucggcaauggacgaaagucugaccgagcaacgccgcguga
gugaagaagguuuucggaucguaaaacucuguuguuagagaagaacaagg
acguuaguaacugaacguccccugacgguaucuaaccagaaagccacggc
uaacuacgugccagcagccgcgguaauacguagguggcaagcguuguccg
gauuuauugggcguaaagcgagcgcaggcgguuucuuaagucugauguga
aagcccccggcucaaccggggagggucauuggaaacugggagacuugagu
gcagaagaggagaguggaauuccauguguagcggugaaaugcguagauau
auggaggaacaccaguggcgaaggcggcucucuggucuguaacugacgcu
gaggcucgaaagcguggggagcaaacaggauuagauacccugguagucca
cgccguaaacgaugagugcuaaguguuggaggguuuccgcccuucagugc
ugcagcaaacgcauuaagcacuccgccuggggaguacgaccgcaagguug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacc
acucuagagauagagcuuucccuucggggacaaagugacagguggugcau
gguugucgucagcucgugucgugagauguuggguuaagucccgcaacgag
cgcaacccuuauuguuaguugccaucauuuaguugggcacucuagcgaga
cugccggugacaaaccggaggaagguggggaugacgucaaaucaucaugc
cccuuaugaccugggcuacacacgugcuacaaugggaaguacaacgaguc
gcuagaccgcgaggucaugcaaaucucuuaaagcuucucucaguucggau
ugcaggcugcaacucgccugcaugaagccggaaucgcuaguaaucgcgga
ucagcacgccgcggugaauacguucccgggccuuguacacaccgcccguc
acaccacgagaguuuguaacacccgaagucggugagguaaccuuuuugga
gccagccgccuaaggugggauagaugauuggggugaagucguaacaaggu
agccguaucggaaggugcggcuggauca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<...<....<<<........>>>....>.>>>......<<...
.....<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>
>>......>>.>.......<<<<<<<<....>>>>>>>>........<<<
<<....>>>>>..>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<
<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...
>>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>
>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<
<<......<<<<....>>>>.....>>>>....<<<<<<..........<
<<..............>>.>..........>>>>>>......<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<...
....<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<.
<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>
>>>>>>...........<<....>>.>>>>>>>..>>>>>..>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<.......<<<<<....
.<<<<<....>>>>>................>>>>.>..<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>..
...<<<<<.....>>>>>........>>>>.........>>>...>>>>>
>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.
........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
.<<<<.<<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.
>>>.>>>>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....
<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6o90 Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.49 Å
Binding residue
(original residue number in PDB)		K13 R14 Y21 G24 I25 G26 T28 T29 R44 N76 R90 H91 G94 L95 P96 T97 R98 G99 Q100 N101 K103 N105 R107 T108 P112
Binding residue
(residue number reindexed from 1)		K12 R13 Y20 G23 I24 G25 T27 T28 R43 N75 R89 H90 G93 L94 P95 T96 R97 G98 Q99 N100 K102 N104 R106 T107 P111
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o90, PDBe:6o90, PDBj:6o90
PDBsum6o90
PubMed33004869
UniProtA0A1B4XKT7

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