Structure of PDB 3jd5 Chain m Binding Site BS01

Receptor Information
>3jd5 Chain m (length=118) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MATPSLRGRLARLGNPRKPILKPNKPLILANHVGERRREKGEATCITEMS
IMMACWKQNEFRDEACKKEIRDFFDCASRAEAARKMRSIQEDLGELGSLP
PRKLNKLLQRFPNKPHLS
Ligand information
>3jd5 Chain A (length=952) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agguuuggucccagccuuccuguuaacucuuaauaaacuuacacaugcaa
gcaucuacaccccagugagaaugcccucuagguuauuaaaacuaagagga
gcuggcaucaagcacacacccuguagcucacgacgccuugcuuaaccaca
ccccacgggaaacagcagugacaaaaauuaagccauaaacgaaaguuuga
cuaaguuauauuaauuaggguugguaaaucucgugccagccaccgcgguc
auacgauuaacccaagcuaacaggaguacggcguaaaacguguuaaagca
ccauaccaaauaggguuaaauucuaacuaagcuguaaaaagccaugauua
aaauaaaaauaaaugacgaaagugacccuacaauagccgacgcacuauag
cuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaacac
agauaauuacauaaacaaaauuauucgccagaguacuacuagcaacagcu
uaaaacucaaaggacuuggcggugcuuuauauccuucuagaggagccugu
ucuauaaucgauaaaccccgauaaaccucaccaauucuugcuaauacagu
cuauauaccgccaucuucagcaaacccuaaaaaggaaaaaaaguaagcgu
aauuaugauacauaaaaacguuaggucaagguguaaccuaugaaauggga
agaaaugggcuacauucucuacaccaagagaaucaagcacgaaaguuauu
augaaaccaauaaccaaaggaggauuuagcaguaaacuaagaauagagug
cuuaguugaauuaggccaugaagcacgcacacaccgcccgucacccuccu
caaauagauucagugcaucuaacccuauuuaaacgcacuagcuacaugag
aggagacaagucguaacaagguaagcauacuggaaagugugcuuggauaa
au
<<<.<..{..[[.>.>>><<<<<<<.<..<<<<<<<.....<<<.<<<..
..............<<......<<<<<<..<<<.......>>>..>>>>.
>>.<<<....<<<..<<.....>>.>>>......>>>..........>>.
..............>>>>>>..........<<.....<<......>>...
>>....>.>>>>>>....<<<<<<<.....(((.....((.>>>))....
...)))..>>>.>..>.>>>>>>>.....<<<((.....<<<.<...<..
..........<<<<<<........<<.<..<<<......>>>...>.>>.
................<....>..>>>>>>......>....>>>>..<<<
<<<<<....<...<<<<.........>>>>...>.>>>>>>..>>.....
.<<<<<<.......))...>>>>>>.>>>.<<<.......<<<....>>>
.....>>>...]]..}<<<<<.<<<<<<<....<..<<<<<...<<<<<<
<<<.....<<........>>..........<<<.<<<...........<<
.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>..
...<<.......>.>........>>>...>>>>>>>>....>>>.>>>..
>>.>>>>>>>......<<<<......>>>>..............<<<<<<
........>>>>>>..........>>>>>.....<<<<<<<.........
>>>>>>>......>....>>>>>>>>>>.>>....<..<<.<...<<<<<
<....<.....<<<<<....<........>....>>>>>...>......>
>>>>>....>.>>...>......<<<<<<<<....>>>>>>>>.......
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jd5 Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Resolution7.0 Å
Binding residue
(original residue number in PDB)		P4 S5 R9 A11 R12 R17 K18 K22 N24 K25 H32 V33 G34 E35 R36 R37 R38 R84 K85 S98 K106 Q109 R110
Binding residue
(residue number reindexed from 1)		P4 S5 R9 A11 R12 R17 K18 K22 N24 K25 H32 V33 G34 E35 R36 R37 R38 R84 K85 S98 K106 Q109 R110
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0032543 mitochondrial translation
Cellular Component
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005761 mitochondrial ribosome

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3jd5, PDBe:3jd5, PDBj:3jd5
PDBsum3jd5
PubMed24799711
UniProtQ2HJE8

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