Structure of PDB 8uu9 Chain l Binding Site BS01

Receptor Information
>8uu9 Chain l (length=135) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVG
TMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVK
DLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPK
Ligand information
>8uu9 Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauac
augcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgug
ggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaauac
cgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggcu
aucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaugg
ccuaccaaggcaacgaugcauagccgaccugagagggugaucggccacac
ugggacugagacacggcccagacuccuacgggaggcagcaguagggaauc
uuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaag
guuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagua
acugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacgu
gccagcagccgcgguaauacguagguggcaagcguuguccggauuuauug
ggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagcccccg
gcuuaaccggggagggucauuggaaacuggaagacuggagugcagaagag
gagaguggaauuccacguguagcggugaaaugcguagauauguggaggaa
caccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcga
aagcguggggagcaaacaggauuagauacccugguaguccacgccguaaa
cgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcuaa
cgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaaa
ggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucgaa
gcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucuggag
acagagcuuucccgggacaaagugacagguggugcaugguugucgucagc
ucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuugau
uuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaag
ccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccugg
gcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgagg
uggagccaaucccauaaaaccauucucaguucggauuguaggcugcaacu
cgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacgg
ugaauacguucccgggccuuguacacaccgcccgucacaccacgagaguu
uguaacacccgaagucgguaggguaaccggagccagccgccgaagguggg
acagauaauuggggugaagucguaacaagguagccguaucggaaggugcg
gcuggaucaccuccu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<<......>>.>>>>>......<<........<<<<
<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......>
>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>>
>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<.......
>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>.......
..<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<
<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<....
....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<.
....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........
<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<<
<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...<
<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>...
........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>..
..<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>......
....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..)
)>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)
))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<..
......>>..........<<<<<<<......<<<<<<<....<<<<<...
.>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<<......<<
<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<
<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....>
>>>>........>>>>.......>.>>>...>>>>>>>>>...>>>>>>>
...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>>
>...>>....>>>.....>>>>>>>......<....<<<<<<<.......
.>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>>
>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<
<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>..
>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>
>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu9 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		P2 N5 Q6 R9 R12 Q13 S14 F31 S40 P41 Q42 R44 K57 N59 S60 A61 L62 R63 S71 G97 V100 K101 D102 R123 G124 Q125 S126 R127 S128 K129 T132 K134
Binding residue
(residue number reindexed from 1)		P1 N4 Q5 R8 R11 Q12 S13 F30 S39 P40 Q41 R43 K56 N58 S59 A60 L61 R62 S70 G96 V99 K100 D101 R122 G123 Q124 S125 R126 S127 K128 T131 K133
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu9, PDBe:8uu9, PDBj:8uu9
PDBsum8uu9
PubMed38407413
UniProtA0A660JM56

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