Structure of PDB 7bgd Chain l Binding Site BS01 |
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| >7bgd Chain a (length=1096)
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cuggagaguuugauccuggcucaggaugaacgcuggcggcgugccuaaua
caugcaagucgagcgaacggacgagaagcuugcuucucugauguuagcgg
cggacgggugaguaacacguggauaaccuaccuauaagacugggauaacu
ucgggaaaccguagcuaauaccggauaauauuuugaaccgcaugguucaa
aagugaaagacggucuugcugucacuuauagauggauccgcgcugcauua
gcuaguugguaagguaacggcuuaccaaggcaacgaugcauagccgaccu
gagagggugaucggccacacuggaacugagacacgguccagacuccuacg
ggaggcagcaguagggaaucuuccgcaaugggcgaaagccugacggagca
acgccgcgugagugaugaaggucuucggaucguaaaacucuguuauuagg
gaagaacauauguguaaguaacugugcacaucuugacgguaccuaaucag
aaagccacggcuaacuacgugccagcagccgcgguaauacguagguggca
agcguuauccggaauuauugggcguaaagcgcgcguaggcgguuuuuuaa
gucugaugugaaagcccacggcucaaccguggagggucauuggaaacugg
aaaacuugagugcagaagaggaaaguggaauuccauguguagcggugaaa
ugcgcagagauauggaggaacaccaguggcgaaggcgacuuucuggucug
uaacugacgcugaugugcgaaagcguggggaucaaacaggauuagauacc
cugguaguccacgccguaaacgaugagugcuaaguguuaggggguuuccc
gccccuuagugcugcagcuaacgcauuaagcacuccgccuggggaguacg
accgcaagguugaaacucaaaggaauugacggggaccgucuuguacacac
cgcccgucacaccacgagaguuuguaacacccgaagccgguggaguaacc
uuuuaggagcuagccgucgaaggugggacaaaugauuggggugaagucgu
aacaagguagccguaucggaaggugcggcuggaucaccuccuuucu |
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<.<<<<......................>>>>.>>>>
>......<<........<<<<<<<..<<...<<<<<<<.<<<<.....<<
.<<<....>>>.>>......>>>>......<<<<<<<<<<..>>>>>>>>
>>......<<<<<<...>>>>>>.>>>>>>>..>>>>>>>>>.<<<....
<<<..<<<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<<
....>>>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>
>>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>>
.>>>>>>..<<<<......<<<<....>>>>.....>>>>...<<<<<<<
........<<.<<................>>.>.>......>>>>>>...
>..<<<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>.
.>>>>>>>>>..........<<<((.....<<<<<..<<<.<<<<<<<.<
<<<<<<<<.......<<<<<<.....>>>>>>.....>>>>>>>..>>>>
>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......
>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>>>
>.>>>...>>>..>>>>>....<<<<<<<...<...<<<<.<.....>.>
>>>...>>>>>>>>..........<<<<<<..<<<<<<<<<<<<<.....
>>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<
<<<....>>>>....>>>..)))).]<<<<<.<<<<.>>>>>>>.>>...
.<..<<.<.<<<<.<<<..<<<<<<..<<<<....<.<<<<..<<<..<<
<...>>>.>>>.>>>>.>...>>>>..>>>>>>..>>>.>>>>..>.>>.
..>.....<<<<<<<<<....>>>>>>>>>................ |
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| PDB | 7bgd Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus |
| Resolution | 3.2 Å |
Binding residue
(original residue number in PDB) | P2 T3 N5 Q6 L7 R9 K10 R12 Q13 S14 K18 N29 K31 K32 N39 S40 P41 Q42 K43 R44 K57 N59 S60 A61 L62 R63 K64 S71 Y79 P81 G82 I83 L94 R96 G97 R99 K101 D102 R107 G113 R123 R124 Q125 G126 R127 S128 L129 Y130 T132 K133 K134 |
Binding residue
(residue number reindexed from 1) | P1 T2 N4 Q5 L6 R8 K9 R11 Q12 S13 K17 N28 K30 K31 N38 S39 P40 Q41 K42 R43 K56 N58 S59 A60 L61 R62 K63 S70 Y78 P80 G81 I82 L93 R95 G96 R98 K100 D101 R106 G112 R122 R123 Q124 G125 R126 S127 L128 Y129 T131 K132 K133 |
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| Enzyme Commision number |
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