Structure of PDB 6yt9 Chain l Binding Site BS01

Receptor Information
>6yt9 Chain l (length=114) Species: 470 (Acinetobacter baumannii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQV
AAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTP
IPHNGCRPPKKRRV
Ligand information
>6yt9 Chain 2 (length=894) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaacugaagaguuugaucauggcucagauugaacgcuggcggcaggcuua
acacaugcaagucgagcgggggaagcggaccuagcggcggacgggugagu
aaugcuuaggaaucugccuauuagugggggacaacaucucgaaagggaug
cuaauaccgcauacguccuacgggagaaagcagggccuugcgcuaauaga
ugagccuaagucggauuagcuaguuggugggguaaaggccuaccaaggcg
acgaucuguagcgggucugagaggaugauccgccacacugggacugagac
acggcccagacuccuacgggaggcagcaguggggaauauuggacaauggg
gggaacccugauccagccaugccgcgugugugaagaaggccuuaugguug
uaaagcacuuuaagcgaggaggaggcuacuuuaguuaauaccuagagaua
guggacguuacucgcagaauaagcaccggcuaacucugugccagcagccg
cgguaauacagagggugcgagcguuaaucggauuuacugggcguaaagcg
ugcguaggcggcuuauuaagucggaugugaaauccccgagcuuaacuugg
gaauugcauucgauacuggugagcuagaguaugggagaggaugguagaau
uccagguguagcggugaaaugcguagagaucuggaggaauaccgauggcg
aaggcagccaucuggccuaauacugacgcugagguacgaaagcaugggga
gcaaacaggauuagauacccugguaguccaugccguaaacgaugucuacu
agccguuggggccggcuuuaguggcgcagcuaacgcgauaaguagaccgc
cuggggaguacggucgcaagacuaaaacucaaaugaauugacgg
........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<....
.<<<.<<<..<<<..<<.<<<........>>>.>>>>>......<<....
...<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<......>>>>>
......>>.>.....<<<....>>>....<<<<<..>>>>>>>>>>>>>.
.>>.>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>.
.....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<......
...>>>>>>.<<<<....>>>>...>>>>>>.........<<<....<<<
<....>>>>..>>>..>>.>>>>>>..<<<<......<<<<....>>>>.
....>>>>...<.<<<<<......<<<<<<<<<<.......>>>>>>.>>
>>........>>>>>....>..<<<<<(((...<<<<<.....<<.)))>
>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<
<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>
>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....<
<<<<<<<...<<<......>>>......>>>>>>>>...........<<.
...>>.>>>>>>>..>>>.>>>>>...>>>...>>>>....<<<<<<...
<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<.
.<<<<<<<<<<<<>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>
>.<<<......<<<<....>>>>....>>>..)))).]......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yt9 Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		H21 N27 N28 T32 G38 N39 A40 W43 T45 G47 G48 R52 G53 S54 K56 K86 P114 I115 H117 N118 G119 C120 R121 K124 R126 R127
Binding residue
(residue number reindexed from 1)		H7 N13 N14 T18 G24 N25 A26 W29 T31 G33 G34 R38 G39 S40 K42 K72 P100 I101 H103 N104 G105 C106 R107 K110 R112 R113
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yt9, PDBe:6yt9, PDBj:6yt9
PDBsum6yt9
PubMed32857965
UniProtD0CD20

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