Structure of PDB 5zeu Chain k Binding Site BS01

Receptor Information
>5zeu Chain k (length=117) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRKSTPFA
AQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTISD
VTPQPHNGCRPPKRRRV
Ligand information
>5zeu Chain a (length=1506) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucaggacgaacgcuggcggcgugcuuaacac
augcaagucgaacggaaaggcccuuucggggguacucgaguggcgaacgg
gugaguaacacgugggugaucugcccugcacuuugggauaagccugggaa
acugggucuaauaccgaauacacccugcuggucgcauggccugguagggg
aaagcuuuugcggugugggaugggcccgcggccuaucagcuuguuggugg
ggugauggccuaccaaggcgacgacggguagccggccugagagggugacc
ggccacacugggacugagauacggcccagacuccuacgggaggcagcagu
ggggaauauugcacaaugggcgcaagccugaugcagcgacgccgcgugag
ggaugacggccuucggguuguaaaccucuuucagcacagacgaagcgcaa
gugacgguaugugcagaagaaggaccggccaacuacgugccagcagccgc
gguaauacguaggguccgagcguuguccggaauuacugggcguaaagagc
ucguaggugguuugucgcguuguucgugaaaacucacagcuuaacugugg
gcgugcgggcgauacgggcagacuagaguacugcaggggagacuggaauu
ccugguguagcgguggaaugcgcagauaucaggaggaacaccgguggcga
aggcgggucucugggcaguaacugacgcugaggagcgaaagcguggggag
cgaacaggauuagauacccugguaguccacgccguaaacgguggguacua
gguguggguuuccuugggauccgugccguagcuaacgcauuaaguacccc
gccuggggaguacggccgcaaggcuaaaacucaaaggaauugacgggggc
ccgcacaagcggcggagcauguggauuaauucgaugcaacgcgaagaacc
uuaccuggguuugacaugcacaggacgccggcagagaugucgguucccuu
guggccugugugcagguggugcauggcugucgucagcucgugucgugaga
uguuggguuaagucccgcaacgagcgcaacccuugucucauguugccagc
acguuaugguggggacucgugagagacugccggggucaacucggaggaag
guggggaugacgucaagucaucaugccccuuauguccagggcuucacaca
ugcuacaauggccgguacaaagggcugcgaugccgugagguggagcgaau
ccuuucaaagccggucucaguucggaucggggucugcaacucgaccccgu
gaagucggagucgcuaguaaucgcagaucagcaacgcugcggugaauacg
uucccgggccuuguacacaccgcccgucacgucaugaaagucgguaacac
ccgaagccgguggccuaacccuuguggagggagccgucgaaggugggauc
ggcgauugggacgaagucguaacaagguagccguaccggaaggugcggcu
ggauca
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<..<<<<<<<....>>>>>.>>>..>>>>>......
<<........<<<<<<<..<<...<<<<<<<<<<<<.....<<<<<....
..>>>>>......>>>>.....<<<<<<<<<<<<..>>>>>.>>>>>>>.
...<<....>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>
>.........<<<...<<<<<....>>>>.>>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<.<<<<<......<<....
>>.......>>>>>....>..<<<<<(((...<<<<<.....<<.)))>>
.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<
<<...<<<.<<<<<<<.<<<<<<<<<<.....<<<<<<<.....>>>>>>
>...>>>>>>>..>>>>>>>>>>...<<<<<<<<...<<<<<<<....<<
<<<<<<<..<<<......>>>.....>>>>>>>>>...........<<..
..>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<...<
<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<..
<<<<<<<<<<<<...>>>>>>>>>>>>...<<..))>>.....>>>>>>.
>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<
<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>.......
...<<<<<<<......<<<<<<<...<<<<<<<....>>>>>>>.<<...
..>>.>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<....>>
>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<....<<..<
<<......>>>>>.....>>>>>>.....<<<<<.....>>>>>......
..>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>>>>
>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>....
>>>......>>>>>>>......<....<<<<<<<........>>>>>>>.
...>.....>>>>>>....<<<<<<<..........>>>>>>>......>
>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<..<<<
<....<.<<<<..<<<..<<.....>>.>>>.>>>>.>...>>>>..>>>
>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>
......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5zeu Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		H31 N37 N38 S42 G48 N49 W53 S55 G57 H58 G63 S64 K66 H127 N128 C130 R131 R136 R137
Binding residue
(residue number reindexed from 1)		H10 N16 N17 S21 G27 N28 W32 S34 G36 H37 G42 S43 K45 H106 N107 C109 R110 R115 R116
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5zeu, PDBe:5zeu, PDBj:5zeu
PDBsum5zeu
PubMed30206241
UniProtA0QSL6|RS11_MYCS2 Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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