Structure of PDB 5x8r Chain k Binding Site BS01

Receptor Information
>5x8r Chain k (length=118) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPF
AAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR
DVTPMPHNGCRPPKKRRV
Ligand information
>5x8r Chain a (length=1480) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuuaa
cacaugcaagucggacgggaaguguuuccaguggcggacgggugaguaac
gcguaagaaccugcccuugggaggggaacaacagcuggaaacggcugcua
auaccccguaggcugagaagcaaaaggaggaauccgcccgaggaggggcu
cgcgucugauuagcuaguuggugagguaauagcuuaccaaggcgaugauc
aguagcugguccgagaggaugaucagccacacugggacugagacacggcc
cagacuccuacgggaggcagcaguggggaauuuuccgcaaugggcgaaag
ccugacggagcaaugccgcguggaggcagaaggcccacgggucgugaacu
ucuuuucccggagaagaagcaaugacgguauccggggaauaagcaucggc
uaacucugugccagcagccgcgguaagacagaggaugcaagcguuauccg
gaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgccguca
aaucccagggcucaacccuggacaggcgguggaaacuaccaagcuggagu
acgguaggggcagagggaauuuccgguggagcggugaaaugcguagagau
cggaaagaacaccaacggcgaaagcacucugcugggccgacacugacacu
gagagacgaaagcuaggggagcgaaugggauuagauaccccaguaguccu
agccguaaacgauggauacuaggcgcugugcguaucgacccgugcagugu
uguagcuaacgcguuaaguaucccgccuggggaguacguucgcaagaaug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccgcgaau
ccucuugaaagagaggggugccuucgggaacgcggacacagguggugcau
ggcugucgucagcucgugccguaagguguuggguuaagucccgcaacgag
cgcaacccucguguuuaguugccaacguguuuggaacccugaacagacug
ccggugauaagccggaggaaggugaggaugacgucaagucaucaugcccc
uuaugcccugggcgacacacgugcuacaauggccgggacaaagggucgcg
aucccgcgagggugagcuaaccccaaaaacccguccucaguucggauugc
aggcugcaacucgccugcaugaagccggaaucgcuaguaaucgccgguca
gccauacggcggugaauucguucccgggccuuguacacaccgcccgucac
acuaugggagcuggccaugcccgaagucguuaccuuaaccgcaaggaggg
ggaugccgaaggcagggcuagugacuggagugaagucguaacaagguagc
cguacuggaaggugcggcuggaucaccucc
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<<<<<..>>>>>.>>>>>......<<.......
<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>>>...
...>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>>>.>>
.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>......>
>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.........>>>
>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<....>
>>>..>>>..>>.>>>>>>..<<<<......<<<<<..>>>>>.....>>
>>...<<<<<<<..................>>>>>>>.....<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<<<<<.
....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>...<<<
.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>......>>
>>>>>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<........>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<......<<<<<<<..<
<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<...<<<<.....>>>>....>>>>>>>.....
<<<<<.....>>>>>........>>>>.........>>>...>>>>>>>>
>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....<<<..<<.
..<<<....>>>...>>....>>>.....>>>>.>>......<....<<<
<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<....
......>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<
<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<....>>.>>>
>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>.....<<<
<<<<<<....>>>>>>>>>...........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5x8r Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
Resolution3.7 Å
Binding residue
(original residue number in PDB)		N37 N38 G48 R49 V50 W53 S55 G57 G63 T64 R66 K96 P124 H127 N128 G129 C130 R131 P133 K134 R136 R137
Binding residue
(residue number reindexed from 1)		N17 N18 G28 R29 V30 W33 S35 G37 G43 T44 R46 K76 P104 H107 N108 G109 C110 R111 P113 K114 R116 R117
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0009507 chloroplast
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5x8r, PDBe:5x8r, PDBj:5x8r
PDBsum5x8r
PubMed28582576
UniProtP06506|RR11_SPIOL Small ribosomal subunit protein uS11c (Gene Name=rps11)

[Back to BioLiP]