Structure of PDB 8uu6 Chain j Binding Site BS01

Receptor Information
>8uu6 Chain j (length=97) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSIYTVLRA
VHKYKDSREQFEMRTHKRLIDIVNPTPQTVDSLMRLDLPSGVDIEIK
Ligand information
>8uu6 Chain a (length=1516) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaaua
caugcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgu
gggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaaua
ccgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggc
uaucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaug
gccuaccaaggcaacgaugcauagccgaccugagagggugaucggccaca
cugggacugagacacggcccagacuccuacgggaggcagcaguagggaau
cuuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaa
gguuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagu
aacugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacg
ugccagcagccgcgguaauacguagguggcaagcguuguccggauuuauu
gggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagccccc
ggcuuaaccggggagggucauuggaaacuggaagacuggagugcagaaga
ggagaguggaauuccacguguagcggugaaaugcguagauauguggagga
acaccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcg
aaagcguggggagcaaacaggauuagauacccugguaguccacgccguaa
acgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcua
acgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaa
aggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucga
agcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucugga
gacagagcuuucccgggacaaagugacagguggugcaugguugucgucag
cucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuuga
uuuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaa
gccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccug
ggcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgag
guggagccaaucccauaaaaccauucucaguucggauuguaggcugcaac
ucgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacg
gugaauacguucccgggccuuguacacaccgcccgucacaccacgagagu
uuguaacacccgaagucgguaggguaaccggagccagccgccgaaggugg
gacagauaauuggggugaagucguaacaagguagccguaucggaaggugc
ggcuggaucaccuccu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..................>>>......<<........<<<
<<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......
>>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>
>>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<......
.>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.
<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>......
...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......
<<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<...
.....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<
.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.........
.<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<
<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...
<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>..
.........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>.
...<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.....
.....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..
)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<.
.......>>..........<<<<<<<......<<<<<<<....<<<<<..
..>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<.......<
<<<<<<<<....>>>...<<<......>>>...>>>>>>.....<<<<.<
<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....
>>>>>........>>>>.........>>>...>>>>>>>>>...>>>>>>
>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>
>>...>>....>>>.....>>>>>>>......<....<<<<<<<......
..>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>
>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<
<<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>.
.>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>
>>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu6 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		R7 R9 I40 P41 L42 P43 T44 R53 V55 H56 K57 Y58 K59 Q64 R72
Binding residue
(residue number reindexed from 1)		R3 R5 I36 P37 L38 P39 T40 R49 V51 H52 K53 Y54 K55 Q60 R68
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu6, PDBe:8uu6, PDBj:8uu6
PDBsum8uu6
PubMed38407413
UniProtA0A0U5A730

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