Structure of PDB 8bf9 Chain j Binding Site BS01

Receptor Information
>8bf9 Chain j (length=73) Species: 9940 (Ovis aries) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TKGTSSFGKRRNKTHTLCRRCGSKCPAKRKRKYNWSAKAKRRNTTGTGRM
RHLKIVYRRFRHGFREGTTPKPK
Ligand information
>8bf9 Chain 5 (length=1766) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agcauauuagucagcggaggagaagugaacagggaagagcccagcgccaa
ucccgccccggcggggcggggacauguggcguacggaaggggcccaaguc
cuucugacgaggcgcccguggcgguggaggcgguagggccccggagucgg
guugcuugggaaugcagcccaaagcgggugguaaacuccaucuaaggcua
auaccggcacgagaccgauagucaacaaguaccguaagggaaaguugaaa
cuuugaagagagaguucaagaggcgugaaaccguucgacccgucuugaaa
cacggaccaaggagucuaacacgugcgcgagucggggcucgcacgaaagc
ccguggcgcaaugagcgcacguguuaggacccgaaagauggugaacuaug
ccugggcagggcgaagccagaggaaacucugguggagguccguagcgguc
cugacgugcaaaucggucguccuggguauaggggcgaaagacuaacgaac
caucuaguagcugguucccuccggggccgcugcggugagccuugaagccu
agggcgcgggcccggguggagccgccgcaggugcagaucuuggugguagu
agcaaauauucaaacgagcuuugaaggccgaguggagaaggguuccaugu
aacagcaguugaacaugggucagucgguccugagagaugggcgagcgccg
uucgaagggacgggcgauggccuccguugcccucggccgaucgaaaggga
gucggguucagauccccgaauccggggcggagauggcgccgcgaggcguc
cagugcgguaacgcgaccgaucccggagaagccggcgggagccccgggga
gaguuucuuuucuuuugaagggcagggcgcccuggaauggguucgccccg
agagaggggcccgugccuuggaaagcgucgcgguccggcggcguccggug
agcucucgcuggcccuugaaaauccgggggagaggguguaaaucucgcgc
cgggccguacccauauccgcagcaggucuccaaggugaacagccucuggc
auguuggaacaauguagguaagggaagucggcaagccggauccguaacuu
cgggauaaggauuggcucuaagggcugagcagccgacuuagaacuggugc
ggaccaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggccc
gcggcggguguugacgcgaugugauuucugcccagugcucugaaugucaa
agugaagaaauucaaugaagcgcggguaaacggcuaagguagccaaaugc
cucgucaucuaauuagugacgcgcaugaauggaugaacgagauucccacu
gucccuaccuacuauccagcgaaaccacagccaagggaacgggcuuggcg
gaaucagcggggaaagaagacccuguugagcuugacucuagucuggcacg
gugaagagguuuuuucacugacccggugaggcgggggcgcuucuggcgcc
aagcgcccggccgcccggccggcgcgacccgcuccggggacagugccagg
uggggaguuugacuggggcgguacuuggguuuuaagcaggaggugucaga
aaaguuaccacagggauaacuggcuugugauccuucgaugucggcucuuc
acccacuaauagggaacgugagcuggguuuagaccgucgugagacagguu
aguuuuacccuacugaugauguaugugcuuggcugaggagccaauggggc
gaagcuaccaucugug
......................................[[[...<<<<..
<<<<<<<<<...>>>>>.>>>>.....>>>>...<<.....<<<<....<
<<<.....>>>>..<<.....((.....>>))...>>>>>>.......<<
<<<<<........>>>>>>>.....(((((..<<<<<<)))))..]]]..
...............................<<....>>...........
<<<<....>>>>...........................<<<<.......
.>>>><<<<<<....<<<<<<<<<<<<<..<<<.<<<<<........>>>
>>..>>>.......>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<
<<<<<...<<<....<<<<<<<....>>>>>>>.....>>>...<<<..<
<.<<........>>>>.>>>.>>>>>>>>...<<.......>>.....>>
>>>>...>..>.>>..<<<....>>>...<<<<<<<<.<<......<<<<
.<<<<....>>>>>>>>...>>>>>>>>>>........>>>>>><<....
.<<.....<<<<<<.....>>>>>>.<<<....<<<<<.<<...<<<<<<
..<<.....>>.>>>>>>....((<<<<<<...<<....<<<....>>>.
........<<.<<<....<.....>....>>>>>......>>....>>>.
.<<<<<........>>>>>))<<<<.<<<<....<<<<<......>>>.>
>...<<<....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<
<<<..{{..>>>>>>...<<<<<.<<<<.<<<<.....<<<.....>>>.
....>>>>>>>>..>>>>>.....<<<<<<<......>>>>>>>>>>>..
.>>>>>>>>>>>>.........>>>>>>>..>..........>..>>>.>
>>>.>>>..>>.....<<......>>>>>>>.<<<<.....>>>>..>>>
....<<<<.....<<<<<<<.<<.........<.....<<<<<....<..
..>.....>>>>><<.<<<<<<<<<<....>>>>..>>>>>>.>>.....
.......<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<
.....>>>>......>>>>>>>...<<..<<<..<<<<<<.<...<<...
..<<<<....>>>>.....>>.>>>>>..>>>>>.......<........
...<<<<<.......>>>>>.....>.....>>....>>.>>>>>>>..>
..>>.>>>>>>>..>>>>>>....>>....<<<<<........>>>>>..
..(((((..[[[.[[......((((.[[((((..<<<<<.<<<<<<<<<.
<<<<<<<....>>>>>>>...<<<<<.....<<<<...............
..<<<.<<<<<<....>>>>>>>>>..>>>>..>>>>>....>>>>>>>>
>..>>>>>...<<<.....>>>....>>>>>>..................
..))))..]])))).......<<.......>.>.......<<<<<.<...
.................>...>>>.>>....<<<<<<<....>>>.>>>>
....]]..]]].))))).......<<.<<<<<<<}}..>>>>>..>>.>>
................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8bf9 Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Resolution2.69 Å
Binding residue
(original residue number in PDB)		T2 K3 G4 T5 S6 S7 F8 G9 K10 R11 R12 N13 K14 T15 H16 K25 R43 R45 Y47 N48 W49 K52 R55 R56 Y71 R75 E80 G81
Binding residue
(residue number reindexed from 1)		T1 K2 G3 T4 S5 S6 F7 G8 K9 R10 R11 N12 K13 T14 H15 K24 R29 R31 Y33 N34 W35 K38 R41 R42 Y57 R61 E66 G67
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8bf9, PDBe:8bf9, PDBj:8bf9
PDBsum8bf9
PubMed37983950
UniProtW5P472

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